Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31028.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81077-5|CAB03065.1| 151|Caenorhabditis elegans Hypothetical pr... 109 8e-25
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 28 3.3
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 28 3.3
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 27 5.7
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 27 5.7
Z70686-9|CAA94614.3| 915|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical p... 27 7.6
Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 27 10.0
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 27 10.0
>Z81077-5|CAB03065.1| 151|Caenorhabditis elegans Hypothetical
protein F36A2.6 protein.
Length = 151
Score = 109 bits (263), Expect = 8e-25
Identities = 46/58 (79%), Positives = 53/58 (91%)
Frame = +2
Query: 254 QMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIXATHSSRFIPLK 427
++VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGI ATHSSRFIPLK
Sbjct: 94 ELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151
Score = 97.5 bits (232), Expect = 5e-21
Identities = 49/82 (59%), Positives = 58/82 (70%)
Frame = +3
Query: 9 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 188
LKKKR FRKF YRGVDLDQLLDM EQ +L+ GLKRK +AL+ K+++AKK
Sbjct: 12 LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71
Query: 189 EAPPNEKPEIVKTHLRNMIIVP 254
A EKP VKTHLR+MII+P
Sbjct: 72 AAGVLEKPATVKTHLRDMIILP 93
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 1 TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
T S VFSG++L L + +SL +SN WN
Sbjct: 5 TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 1 TKPSRKSVFSGSSLTGELISISSLICPMSNSWN 99
T S VFSG++L L + +SL +SN WN
Sbjct: 5 TATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 206 EARDREDSLEKHDHRSQMVGSIVGIYNGKTFNQVEIKP 319
E +R+DSLEKH+ + ++ I + N+ + P
Sbjct: 632 EELERDDSLEKHEAKEALIARAKTISKYRRTNETRLSP 669
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 206 EARDREDSLEKHDHRSQMVGSIVGIYNGKTFNQVEIKP 319
E +R+DSLEKH+ + ++ I + N+ + P
Sbjct: 632 EELERDDSLEKHEAKEALIARAKTISKYRRTNETRLSP 669
>Z70686-9|CAA94614.3| 915|Caenorhabditis elegans Hypothetical
protein R10H10.7 protein.
Length = 915
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 227 SLEKHDHRSQMVGSIVGIYNGKTFNQVEI 313
+L K D R + V ++VGIY+ NQV +
Sbjct: 609 TLAKQDSRIKDVKNLVGIYSSHILNQVSL 637
>Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical
protein F21D5.7 protein.
Length = 496
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 191 GSSE*EARDREDSLEKHDHRSQMVGSIVGIYNGK 292
GS + E RD +K + +GSI G++NGK
Sbjct: 411 GSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGK 444
>Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical
protein F21D5.7 protein.
Length = 496
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 191 GSSE*EARDREDSLEKHDHRSQMVGSIVGIYNGK 292
GS + E RD +K + +GSI G++NGK
Sbjct: 411 GSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGK 444
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 333 WPIISGLISTWLKV-FPL*MPTIEPTIW 253
W I++G++ + + F L +P I PT+W
Sbjct: 5 WTIVAGVLYAEIAITFTLLLPWIRPTLW 32
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 333 WPIISGLISTWLKV-FPL*MPTIEPTIW 253
W I++G++ + + F L +P I PT+W
Sbjct: 5 WTIVAGVLYAEIAITFTLLLPWIRPTLW 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,956,170
Number of Sequences: 27780
Number of extensions: 180713
Number of successful extensions: 450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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