Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31028.Seq
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 2.3
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 2.3
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 23 2.3
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 4.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 4.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 4.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 4.1
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 4.1
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 5.4
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 7.1
DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein. 21 9.4
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 152 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSQMVGSIVGIYN 286
N E R+ R +S+ +RDR++ + +H+ ++ S+ YN
Sbjct: 48 NSYKNEREYRKYRETSKERSRDRKEREKSKEHK--IISSLSNNYN 90
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 152 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSQMVGSIVGIYN 286
N E R+ R +S+ +RDR++ + +H+ ++ S+ YN
Sbjct: 48 NSYKNEREYRKYRETSKERSRDRKEREKSKEHK--IISSLSNNYN 90
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 2.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 152 NGIGQEAASRQERGSSE*EARDREDSLEKHDHRSQMVGSIVGIYN 286
N E R+ R +S+ +RDR++ + +H+ ++ S+ YN
Sbjct: 48 NSYKNEREYRKYRETSKERSRDRKEREKSKEHK--IISSLSNNYN 90
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 13 RKSVFSGSSLTGELISISSLICPMSNSW 96
RKS S +SL LI ++ CP+ SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 13 RKSVFSGSSLTGELISISSLICPMSNSW 96
RKS S +SL LI ++ CP+ SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 13 RKSVFSGSSLTGELISISSLICPMSNSW 96
RKS S +SL LI ++ CP+ SW
Sbjct: 277 RKSP-SLTSLNAYLIKNQTITCPIKVSW 303
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 13 RKSVFSGSSLTGELISISSLICPMSNSW 96
RKS S +SL LI ++ CP+ SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 4.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 390 SVLHTAQGSFRSSRASKTTSRLSVTQNLHEITIK 491
SVLH+AQ SS ++ T ++T L + ++
Sbjct: 940 SVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQ 973
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.4 bits (43), Expect = 5.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 367 CKAR*TRYXCYTQLKVHS 420
CKA + C QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.0 bits (42), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 451 LEVVLDALLERNEP*AVCSTDTGSTVLYRL 362
L V+++ LL VC T ++ LYRL
Sbjct: 11 LFVIINVLLHGQVICFVCKDITSTSALYRL 40
>DQ435337-1|ABD92652.1| 135|Apis mellifera OBP20 protein.
Length = 135
Score = 20.6 bits (41), Expect = 9.4
Identities = 6/34 (17%), Positives = 19/34 (55%)
Frame = -1
Query: 484 VISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 383
V+ FC+ ++ + + ++ ++ +C T++G
Sbjct: 5 VVIFAFCICVNAMTIEELKIQLHDVQEICKTESG 38
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,549
Number of Sequences: 438
Number of extensions: 2169
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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