Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31027.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 80 1e-15
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 73 2e-13
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 72 3e-13
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 48 4e-06
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.89
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.89
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 27 6.2
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 8.3
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 8.3
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/84 (40%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 177
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 178 ELNYAMDVYELNRRVNSSESIVGW 249
+++Y ++ + +VNS E+IVGW
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGW 109
Score = 53.6 bits (123), Expect = 8e-08
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +3
Query: 255 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGXMGLRAYVCVPLGVPNGKQGCMFTP 434
TG V SS+IH++Y+RE P+H+T+DT G ++A+V L + + + F
Sbjct: 112 TGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQE 171
Query: 435 VDVTLTCYEPEIVGLQVCQKT 497
+ V L + E VG V + T
Sbjct: 172 IPVDLRMVDAERVGFDVLKAT 192
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 175 AELNYAMDVYELNRRVNSSESIVGWXALAMK 267
+ NY ++ + +R+N+ E +VGW + K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 71.7 bits (168), Expect = 3e-13
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 175 AELNYAMDVYELNRRVNSSESIVGWXALAMK 267
+ NY ++ + +R+N+ E IVGW + K
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGW 249
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGW 104
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -2
Query: 439 STGVNMQPCFPFGTPNGTQT--YARKPXXPPAXEVSRVTXTGSRHSR 305
+T + C P P T + + +P PP +S +T TG H R
Sbjct: 71 TTNTGHRHCRPPSNPATTNSGHHQLRPPPPPPPPLSAITTTGHHHHR 117
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 463 GS*HVRVTSTGVNM-QPCFPFGTPNGTQTYARKPXXPPAXEVS 338
GS H V G+ M +P P+G G Y PPA ++
Sbjct: 260 GSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSGGPPAHHMN 302
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -2
Query: 463 GS*HVRVTSTGVNM-QPCFPFGTPNGTQTYARKPXXPPAXEVS 338
GS H V G+ M +P P+G G Y PPA ++
Sbjct: 260 GSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSGGPPAHHMN 302
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,385,086
Number of Sequences: 28952
Number of extensions: 259498
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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