Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31025.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 114 6e-26
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 61 6e-10
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 35 0.057
04_01_0086 - 946630-947115 33 0.17
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 31 0.70
05_02_0006 - 5541290-5541961 31 0.70
03_06_0069 - 31449319-31450368 31 0.92
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 31 0.92
12_01_0374 - 2910752-2911516 30 1.6
07_01_0533 + 3942813-3943164,3943244-3943458 29 2.8
12_01_0090 + 717524-719080 28 4.9
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 4.9
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 28 4.9
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 28 4.9
09_03_0089 + 12265916-12267232 28 6.5
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 28 6.5
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 28 6.5
12_02_0606 - 20926179-20926594,20934542-20934707,20934788-209349... 27 8.6
04_01_0614 + 8049199-8049579 27 8.6
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 114 bits (274), Expect = 6e-26
Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Frame = +2
Query: 245 GVVRT---ADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKR 415
GV+ T AD VCFDVDSTV DEGIDELA FCG G V TA+AM G + F+EAL R
Sbjct: 118 GVLETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEALAAR 177
Query: 416 LXIIRPNVGQIREFIXKFPVRLTPGITELVKSYTKEGSSYI*XRGGFXSLIETVAERLNI 595
L +I+P + Q+ + + K P R++PGI +L+K + GGF +I+ VA L I
Sbjct: 178 LSLIKPYLSQVDDCLVKRPPRISPGIADLIKKLKANNTDVFLVSGGFRQMIKPVASELGI 237
Query: 596 P 598
P
Sbjct: 238 P 238
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = +2
Query: 374 MGGNMTFQEALKKRLXIIRPNVGQIREFIXKFPVRLTPGITELVKSYTKEGSSYI*XRGG 553
M G++ F++AL RL + +P++GQ+ + + K P R++PGI ELVK + GG
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGIAELVKMLKAKNVDVYLVSGG 60
Query: 554 FXSLIETVAERLNIP 598
F +I+ VA +L IP
Sbjct: 61 FRQMIKPVAMQLGIP 75
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -2
Query: 381 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPV 202
PPI+S++SL+ S+P P + P +TV + S + S+ ++P S ++ S PV
Sbjct: 4 PPISSSLSLMASNPIPS--PPVAKPGRPLTVAACSNSSSSSSSSSP-SSTSCSAAWSLPV 60
Query: 201 RASSTSR 181
S+ R
Sbjct: 61 ATSAGRR 67
>04_01_0086 - 946630-947115
Length = 161
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 381 PPIASAV-SLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STP 205
PP++S+V + + S++ ++ +QT + +RT+PG+S ATSR S
Sbjct: 44 PPVSSSVLDRVRDVVLRLAMLSAASTTTKQGALPPQQQTATPIRTSPGRSAAATSRRSAA 103
Query: 204 VRAS 193
VR S
Sbjct: 104 VRMS 107
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -2
Query: 390 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 259
V+ PP +S + + SSP +N + SMPSS T ES S T +A
Sbjct: 486 VLAPPSSS--NAVESSPKIENSGTKSMPSSQHTSESDSATTSAA 527
>05_02_0006 - 5541290-5541961
Length = 223
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 348 SSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPVRASSTSR 181
SSP +++MP++C+ V + SA R++P S G + + P + + +R
Sbjct: 114 SSPLCSAQGTTAMPTTCLPVYTAGSPGSSASRSSPAASQGRPTSSAVPPHSLARAR 169
>03_06_0069 - 31449319-31450368
Length = 349
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 354 LTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPVRA--SSTSR 181
+ S+P P SSS SS + ++T +++ SA + GQ G + P+R ++S
Sbjct: 22 IVSNPSP---TSSSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLRCPRCNSSN 78
Query: 180 TAGCFSN 160
T C+ N
Sbjct: 79 TKFCYYN 85
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 30.7 bits (66), Expect = 0.92
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = -2
Query: 384 LPPIASAVSLLTS----SPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR 217
LPP ++S LT+ +PF ++A S+ PSS T ST QT S +P S G S
Sbjct: 191 LPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPT-GSTPTQTPS----SPSSS-GTPSP 244
Query: 216 *STPVRAS--STSRTAGCFSNCKEPS 145
S+P +S ST+R + S+ K S
Sbjct: 245 SSSPSNSSGGSTARDSSSPSSRKHKS 270
>12_01_0374 - 2910752-2911516
Length = 254
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = -2
Query: 429 LMMXSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRT 250
LM F + S + PP+ + S +SS FP + +++S SS +T+ + SA
Sbjct: 48 LMSLPSFLRPS--ALKPPVPRSTSSHSSSFFPSSASTASFSSSSAATYTTTYSSSSATNQ 105
Query: 249 TPGQSVGATSR*STPVRASSTS 184
P A + + PV ++ +
Sbjct: 106 YPYYGKAAAAA-AAPVTVTTNN 126
>07_01_0533 + 3942813-3943164,3943244-3943458
Length = 188
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -2
Query: 417 SLFFKASWNVILPPIA--SAVSLLTSSPF-PQNLASSSMPSSCMTVESTSKQTQSAVRTT 247
+L A+ NV PP + S V + SP P A+ ++PS SK T + TT
Sbjct: 99 ALELPAACNVKTPPASQCSTVGVPMPSPATPATPAAPAVPSETPAGTGGSKATPTTATTT 158
Query: 246 PGQSVGATS 220
GQS S
Sbjct: 159 TGQSASGGS 167
>12_01_0090 + 717524-719080
Length = 518
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/78 (34%), Positives = 40/78 (51%)
Frame = -2
Query: 489 PGVSLTGNFXMNSLI*PTLGLMMXSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 310
P S G +++L+ LGL+ S F A + LPP SA+SLL +P P L S S+
Sbjct: 13 PRRSAAGGHQLHALL-AKLGLLHRSEFLSALLSR-LPPSPSALSLLLEAP-PAVL-SPSL 68
Query: 309 PSSCMTVESTSKQTQSAV 256
+ S+S+ SA+
Sbjct: 69 VCPVIVAFSSSQAPSSAL 86
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 384 LPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STP 205
LPPI P P++ ++S PS+ S+ A P + TSR STP
Sbjct: 304 LPPIPPPPPPPPPPPMPRSRSASPSPST----SSSGSAGPPAPPPPPPPAAKRTSRTSTP 359
Query: 204 VRASSTSRTAG 172
SS++ +G
Sbjct: 360 ATTSSSAPASG 370
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 354 LTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTT 247
LTS+P P LA++ P+ S + Q Q+A TT
Sbjct: 17 LTSTPTPHPLAAAHPPTPTSASASAAMQMQAATTTT 52
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 348 SSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPVRASSTS 184
S+P P ASS+ PS + + ++T ++ +PG + R S+P SS S
Sbjct: 50 SNPNPNAAASSAPPSPPLAEDPAGRRTLASPYPSPGLPPLPSRRSSSPFAISSPS 104
>09_03_0089 + 12265916-12267232
Length = 438
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -2
Query: 387 ILPPIASAVSLLTSSPFPQNL-ASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*S 211
+L P A + +SPFP +SSS P S T S++ +A TT + T+
Sbjct: 215 LLRPFAQKLPT-AASPFPPYTSSSSSTPLSTSTPSSSNLAAANANATTTSTAAATTATSV 273
Query: 210 TPVRASSTSRT 178
P A+ T
Sbjct: 274 NPTAAAGAGDT 284
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = -2
Query: 387 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*ST 208
+LP SA S L+SSP P S+ S + S T S T+ + A++ +T
Sbjct: 609 LLPGSPSATSSLSSSPSPAPSPDSATASRSASPTSARPATSSWTCTS---AATASASPAT 665
Query: 207 PVRASSTS 184
R SSTS
Sbjct: 666 AKRTSSTS 673
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 372 ASAVSLLTSSPFPQNLASSSMP-SSCMTVESTSKQTQSAVRTTPGQSV 232
A+AV+++ SSP PQ +P + ST+ T S+ R TP S+
Sbjct: 16 AAAVAVVRSSPQPQQQQQQQLPIPQSGSPTSTTTTTTSSSRLTPELSL 63
>12_02_0606 -
20926179-20926594,20934542-20934707,20934788-20934991,
20935076-20935288
Length = 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 239 CPGVVRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAM 376
CPGVV AD V V G D G+ D V L +EA+
Sbjct: 118 CPGVVSCADIVALAARDAVSYQFGRDLWDVQLGRRDGVVSLASEAL 163
>04_01_0614 + 8049199-8049579
Length = 126
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 345 SPFPQNLASSSMPSSCM--TVESTSKQTQSAVRTTPGQSVGATSR*STPVRASSTSRTAG 172
SP P N A+ S P++ + TV STS R + AT+ ST AS+ RTA
Sbjct: 32 SPSPSN-ATLSGPTAPLESTVISTSSLRDRESRDKNNAAATATAAASTTRLASARQRTAH 90
Query: 171 C 169
C
Sbjct: 91 C 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,960
Number of Sequences: 37544
Number of extensions: 274269
Number of successful extensions: 915
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -