Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31025.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95) 57 9e-09
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 30 1.6
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018) 29 2.2
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27) 29 2.2
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55) 29 2.2
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 29 3.8
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 28 5.0
SB_39591| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 28 5.0
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 27 8.7
>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
Length = 209
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +2
Query: 218 RDVAPTDCPGVVRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 352
R + ++ + ++AD VCFDVDSTV+ E IDELA FCG+G+EV
Sbjct: 2 RQMTESETRVIWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 35.1 bits (77), Expect = 0.043
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -2
Query: 351 TSSPFPQNLASSSMPSSCMTVESTSKQ---TQSAVRTTPGQSVGATSR*STPVRASSTSR 181
T PFP ASSS+ + T E T + T R TPG S+G +RASST
Sbjct: 235 TLDPFPTKTASSSISNKGHTAEKTGYKGITTFIVPRETPGLSIGKKED-KLGIRASSTCP 293
Query: 180 TAGCFSNCKEPS 145
F N K PS
Sbjct: 294 VH--FDNVKVPS 303
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 381 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATS 220
PP+ +S L PQ ++S+ C V ST +QS T SV TS
Sbjct: 408 PPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNPVTTSTSVATTS 461
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 381 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATS 220
PP+ +S L PQ ++S+ C V ST +QS T SV TS
Sbjct: 388 PPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNPVTTSTSVATTS 441
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -2
Query: 390 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*S 211
V+ P + +S+++ SP + S ++ S K+T+ ++P +V T+
Sbjct: 603 VVTPHTSGVMSVISGSPSDSTVTRSETVATTCPTNSAIKETKIGTYSSPKIAVNKTTAIF 662
Query: 210 TPVRASSTS 184
TP ASST+
Sbjct: 663 TP--ASSTN 669
>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
Length = 349
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 248 LLDSLLGRHHADRHQ*ERLQRRVL 177
+ DS ADRH+ ER+QRRVL
Sbjct: 53 MYDSKAAERRADRHRQERIQRRVL 76
>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
Length = 687
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -2
Query: 399 SWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTT--PGQSVGA 226
S+N LPP A S T++ P ++A+ + T+ S+ T+S++ TT P S
Sbjct: 72 SYNTTLPPAPDATSTATTAISPSSVANMT------TLVSSVNLTRSSLSTTLIPSISTSI 125
Query: 225 TSR*STPVRASSTSR 181
S +T + +T+R
Sbjct: 126 LSYNTTVIETPNTTR 140
>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
Length = 284
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 375 IASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTP 244
+ S +S+ +S ++ASS MPSS +T T + TTP
Sbjct: 51 VPSTISMHSSPSISVSVASSVMPSSTSVAPTTPPATTTKAPTTP 94
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = -2
Query: 387 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*ST 208
+ PP +S+ +SSP P + +SSS SS + S+S + S+ ++ S ++S
Sbjct: 570 VSPPSSSS----SSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---- 621
Query: 207 PVRASSTSRTAGCFS 163
+SS+S + G FS
Sbjct: 622 --SSSSSSASLGYFS 634
>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 358 SFNLVSFPAELGQFIDAFILYDGRV-YIEANAVRCPN 251
S L SFPA G F+D F+ G+ + V CPN
Sbjct: 380 SKELSSFPAYSGSFVDQFVCDSGKEDCMMGKCVDCPN 416
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -2
Query: 393 NVILPPIASAVSLLTSSPFPQN---LASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGAT 223
N + P+++ + T P + + ++ P++ +T +T T T+P SV
Sbjct: 145 NPLSTPVSTTSTKATQGLLPSSTPEMPETAKPTTVVTQVTTMPNTSVTPLTSPSTSVTQR 204
Query: 222 SR*STPVRASST 187
+R +TPV +T
Sbjct: 205 TRPTTPVTQEAT 216
>SB_39591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -2
Query: 339 FPQNLASSSMPSSCMTVESTSKQTQSAVR---TTPGQSVGATSR*STPVRASSTSRTA 175
FP +L+ +S + C T++ ++ TQ A TT G S GA + +R S SRT+
Sbjct: 93 FPPSLSPNSAMAECKTLKRSTSVTQGASGRDVTTWGASTGADMQ---QLRISQESRTS 147
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = -2
Query: 378 PIASAVSLLTS----SPFPQNLASSSMPSSCMTVES---TSKQTQSAVRTTPGQSVGATS 220
P AS + +L+S SP A+SS + V S T + + + TPGQS T
Sbjct: 985 PPASRIPVLSSKPQASPTTDRRAASSSSNHSTPVNSAPPTPTKNATPSKGTPGQSTSGTP 1044
Query: 219 R*STPVRASSTSRTAG 172
TP + + + T G
Sbjct: 1045 VNGTPCKGTPLNSTPG 1060
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -2
Query: 372 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPVRAS 193
A A+S L P ++ +SSM SS M STS T S + S +T + P+ +S
Sbjct: 922 AVAISSLVL-PTTTSVLTSSMESSSMATTSTS-STPSFESSMTTNSTTSTPAEAVPISSS 979
Query: 192 STSRTAGCFSNCKE 151
+S T ++ E
Sbjct: 980 VSSTTTSVLTSSME 993
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 378 PIASAVSLLTSSPF---PQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*ST 208
PI L +S P PQN SS C+T+ ++K+ Q P + + +
Sbjct: 1566 PIKCCTKLSSSCPADCSPQNCKSSCPSICCITIRGSAKEEQQNSFECPVKCL-TSCEPEC 1624
Query: 207 PVRASSTSRT 178
PVR S S+T
Sbjct: 1625 PVRCCSGSQT 1634
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 28.3 bits (60), Expect = 5.0
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -2
Query: 378 PIASAVSLLTSSPFP-QNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPV 202
P+A + SL +SS + + LAS S SC +VE+ S + + + +S S P+
Sbjct: 886 PLAPSTSLTSSSAYSTEGLASGSESGSCPSVEA-SAEAKDCDNNSYSESDSPRREYSDPM 944
Query: 201 RA---SSTSRTAGCFSNCKEPS 145
R SS ++ S+ PS
Sbjct: 945 RGYPNSSIDNSSEADSSLGSPS 966
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 378 PIASAVSLLTSSPF--PQNLASSSMPSSCMTVESTSKQTQSAVRTTP 244
P+ S+ L +SSP P L SSS +S + S+S T S+ T+P
Sbjct: 214 PLTSSSPLTSSSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSP 260
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = -2
Query: 405 KASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA-VRTTPGQSVG 229
K S PPIAS TS P S + + + S TQ+ + TTP +
Sbjct: 675 KTSATTQTPPIASTTDTSTSQTPPIATTPSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 734
Query: 228 ATSR*STPVRASSTSRTA 175
T +TP + T+ A
Sbjct: 735 TTLIATTPSLTTQTTLIA 752
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 215 QRDVAPTDCPGVVRTADCVCFDVDSTVIQDEGIDEL 322
Q ++A T P + RT +DSTVI EG+D+L
Sbjct: 805 QINIALTKLPPI-RTLKQAIISMDSTVIDREGVDKL 839
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,403
Number of Sequences: 59808
Number of extensions: 312934
Number of successful extensions: 1205
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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