Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31025.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 118 4e-27
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 118 4e-27
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 31 0.77
At5g54480.1 68418.m06784 hypothetical protein 30 1.3
At4g31880.1 68417.m04531 expressed protein 29 1.8
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 1.8
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 29 2.4
At5g25265.1 68418.m02995 expressed protein 29 3.1
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 29 3.1
At1g21660.1 68414.m02711 expressed protein low similarity to SP|... 29 3.1
At5g58410.1 68418.m07314 expressed protein contains similarity t... 28 4.1
At5g39540.1 68418.m04789 hypothetical protein predicted proteins... 28 4.1
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put... 28 4.1
At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI ... 28 4.1
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 28 4.1
At1g12140.1 68414.m01406 flavin-containing monooxygenase family ... 28 4.1
At5g41320.1 68418.m05022 expressed protein 28 5.4
At5g07260.1 68418.m00828 homeobox protein-related contains weak ... 27 7.2
At4g00210.1 68417.m00022 LOB domain protein 31 / lateral organ b... 27 9.5
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 27 9.5
At3g05370.1 68416.m00586 disease resistance family protein conta... 27 9.5
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 118 bits (283), Expect = 4e-27
Identities = 57/115 (49%), Positives = 73/115 (63%)
Frame = +2
Query: 254 RTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLXIIRP 433
R+ + VCFDVDSTV DEGIDELA+FCG G V TA AMGG++ F+EAL RL + +P
Sbjct: 81 RSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
Query: 434 NVGQIREFIXKFPVRLTPGITELVKSYTKEGSSYI*XRGGFXSLIETVAERLNIP 598
++ ++ E++ K P RL+PGI ELVK GGF +I VA L IP
Sbjct: 141 SLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVASILGIP 195
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 118 bits (283), Expect = 4e-27
Identities = 57/115 (49%), Positives = 73/115 (63%)
Frame = +2
Query: 254 RTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKRLXIIRP 433
R+ + VCFDVDSTV DEGIDELA+FCG G V TA AMGG++ F+EAL RL + +P
Sbjct: 81 RSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKP 140
Query: 434 NVGQIREFIXKFPVRLTPGITELVKSYTKEGSSYI*XRGGFXSLIETVAERLNIP 598
++ ++ E++ K P RL+PGI ELVK GGF +I VA L IP
Sbjct: 141 SLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVASILGIP 195
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 381 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRT 250
PP LL+S P P S+PS M V S+S SA +
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSATNS 242
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 101 EFDHNSFVTRRRSNRDGSLQFEKQPAVRDVEDALTGVDQRDVAPTDCPGVV 253
E D+NS + R N+ + + +K+ VR+ + +D+RDV C G V
Sbjct: 213 ESDYNSLI---RKNKKKNKKKKKKKNVRESSSVASEIDKRDVEANTCNGQV 260
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 381 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSV 232
PP+ S+V+ TSS +N + +PS E+ + + S P QSV
Sbjct: 399 PPVDSSVTAATSSENEKNKSVQILPSKTSGDETANVSSPSMAEELPEQSV 448
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -2
Query: 375 IASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPVRA 196
IA+ + +S+P + +SS P+S M S T SA TTP S S + A
Sbjct: 395 IATTTTTSSSTPAATSAPASSAPASTMAFPSFG-VTSSATNTTPASSAATFSTTGFGL-A 452
Query: 195 SSTSRT 178
SST T
Sbjct: 453 SSTPAT 458
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -2
Query: 351 TSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSVGATSR*STPVRASSTSRT 178
T+SP + SS PSS +S + A TTP GA+S S +S++S T
Sbjct: 31 TTSPLSFSFNQSSNPSSTGFGFGSSVSSTPASSTTPSFGFGASSTPSFGFGSSASSST 88
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 242 PGVVRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 385
P T + D +V+QD+ I FCG+G E + A+ N
Sbjct: 12 PPTTTTGSFTGLNTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
>At5g25265.1 68418.m02995 expressed protein
Length = 366
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 220 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 89
T + S+SV+N CR+++ + I ++ P +E M FT IL
Sbjct: 72 TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 28.7 bits (61), Expect = 3.1
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -2
Query: 429 LMMXSLFFKASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVES--TSKQ 271
L SLFF + N+++PP SL +SS +L+SSS SS + S TS++
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRR 63
Query: 270 TQSAVRTTPGQSVG 229
T SVG
Sbjct: 64 LSPQKFTVKASSVG 77
>At1g21660.1 68414.m02711 expressed protein low similarity to
SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
sapiens}; supporting cDNA gi|20466222|gb|AY099577.1|
Length = 523
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 321 SSSMPSSCMTVESTSKQTQSAVRTTP 244
SSS+P S T E+T KQ +A + TP
Sbjct: 318 SSSVPKSRTTTETTRKQASNAPKKTP 343
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 108 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVQEL 251
+I+V+ E + + +SLKS Q ATL T L SI ++ + + L
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTSL 878
>At5g39540.1 68418.m04789 hypothetical protein predicted proteins,
Arabidopsis thaliana
Length = 196
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = -1
Query: 403 GFLECHIAAHCFRRQSFNLVSFPAELGQFIDAFILYDGRVYIEANAVRCPNNSWTVCWGD 224
GF I + R + F+ ++ P+ G F + I Y GR+ N ++ N + W
Sbjct: 2 GFSNPTIMSFEVRSEKFDTIALPS--GSFANMLIPYQGRLACVTNTMKNDVNGGIILW-- 57
Query: 223 ITLIDTSESVFN 188
TL D + +++
Sbjct: 58 -TLDDAEKHIWS 68
>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 883
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 414 LFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVEST 280
L K + N LPP+ +A+ + T FPQ+ + S+ ++ T
Sbjct: 333 LELKRTQNSTLPPLLTAIEVFTVIDFPQSKTNEDDVSAIKNIKDT 377
>At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI
type III (LHCA3.1) nearly identical to PSI type III
chlorophyll a/b-binding protein GI:430947; contains Pfam
profile: PF00504 chlorophyll A-B binding protein;
similar to PSI type III chlorophyll a/b-binding protein
GI:430947 from [Arabidopsis thaliana]
Length = 273
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 201 SLVSISVMSPQQTVQELFGQRTAFASM*TRPSYKMKASMNWPSSAG 338
+LVS S+ S QT +++FG + ++ + S+ +KA+ P G
Sbjct: 5 ALVSSSLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVKQG 50
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 348 SSPFPQNLASSSMPSSCMTVESTSKQ--TQSAVRTTPGQSVGATSR*STPVRASSTSRTA 175
S P + + PS TV +T+ + S++ T Q +G++ STP S+ +
Sbjct: 444 SQPTTPSFGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSI 503
Query: 174 GCFSN 160
G F+N
Sbjct: 504 GGFNN 508
>At1g12140.1 68414.m01406 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenase [Cavia porcellus]
GI:191259; contains Pfam profile PF00743: Flavin-binding
monooxygenase-like
Length = 459
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 388 DIPGSLEEETGHHQA*RRSDQRIHXEISX*TNSWYYRVSEKLHERGVIVYLXSGRIXESN 567
DI G +E H A R + + + ++ N W + + E +HE G IV+ +G++ +++
Sbjct: 223 DITGVAKEV---HIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGTIVF-QNGKVVQAD 278
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 378 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQS 235
P S+ SLL S P P +L SS + +T+ Q + V TP S
Sbjct: 370 PKLSSSSLLQSFPVPSSLFPSSSQGITPSASNTNFQMRQPVAQTPDLS 417
>At5g07260.1 68418.m00828 homeobox protein-related contains weak
similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
[Arabidopsis thaliana]
Length = 541
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 394 ECHIAAHCFRRQSFNLVSFPAELGQFIDAFI 302
EC + A C+ + +V+ P ELG +++ +
Sbjct: 496 ECFVTASCYVKADQTMVTSPNELGSYMENMV 526
>At4g00210.1 68417.m00022 LOB domain protein 31 / lateral organ
boundaries domain protein 31 (LBD31) identical to
SP|O81322 LOB domain protein 31 {Arabidopsis thaliana}
Length = 215
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 372 ASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQSV 232
+S V L++S N++SSS CM+ + +Q + A+ P +SV
Sbjct: 129 SSNVPLISSVDSKDNMSSSSSHIPCMSQQQEQEQPKEAIE-VPTESV 174
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 378 PIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVRTTPGQ 238
P S+ S ++SP P N SS SS STS A+ + G+
Sbjct: 80 PCMSSSSSSSTSPAPVNAIVSSASSSSAASSSTSSAASWAILRSDGE 126
>At3g05370.1 68416.m00586 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2 disease resistance
protein GB:AAC15780 from [Lycopersicon pimpinellifolium]
Length = 860
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 200 LTGVDQRDVAPTDCPGVVRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMG 379
LTG D D ++ P + + + F VDS I ++G++ K + ++V +
Sbjct: 622 LTGEDG-DFRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFS 680
Query: 380 GNMTFQEALKKRL 418
GN+ L K L
Sbjct: 681 GNIPESIGLLKEL 693
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,490
Number of Sequences: 28952
Number of extensions: 220037
Number of successful extensions: 769
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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