Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31024.Seq
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               61   3e-10
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)                27   4.7  
SB_55437| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_58461| Best HMM Match : WH2 (HMM E-Value=0.63)                      26   8.1  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 26/47 (55%), Positives = 39/47 (82%)
 Frame = +1

Query: 1   VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
           ++ IL SVGIE+D E+L KVI+EL+GK V+++I AG+ KL+++P GG
Sbjct: 672 IKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATVPTGG 718


>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 107 PAAISCSTSLPLSSVITFLSFSASASIPTELRIF 6
           P A   ++SLPL  +IT   +S   ++   + +F
Sbjct: 777 PTAAEAASSLPLMKIITITGYSVGGAVLVTIAVF 810


>SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)
          Length = 252

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 31  EADAEKLKKVITELNGKDVEQLIAAGRE 114
           + D+EK  K+ T L+ K++E LIA  +E
Sbjct: 209 DEDSEKYIKIFTFLSQKEIETLIAEHKE 236


>SB_55437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -1

Query: 134 TGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTE 18
           TG   +  RP  +SCSTS P SS    L++S S+S+P++
Sbjct: 53  TGKASTSKRP--LSCSTSAPGSSRKRTLAYS-SSSVPSK 88


>SB_58461| Best HMM Match : WH2 (HMM E-Value=0.63)
          Length = 592

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 31  EADAEKLKKVITELNGKDVEQ----LIAAGREKLSSMPVG 138
           E +AE  +K+  EL+    +Q     +A G + LSS+PVG
Sbjct: 274 EKEAESARKLAYELDASPCDQGDSAEVAQGVDTLSSLPVG 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,298,539
Number of Sequences: 59808
Number of extensions: 59021
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)