Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31024.Seq
(365 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 56 5e-09
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 56 5e-09
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 56 1e-08
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 56 1e-08
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 56 1e-08
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 56 1e-08
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 48 3e-06
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 46 6e-06
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.23
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 5.0
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 27 5.0
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 27 5.0
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 26 8.8
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 56.4 bits (130), Expect = 5e-09
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 23 IKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 56.4 bits (130), Expect = 5e-09
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GREKL+S+P GGG
Sbjct: 23 IKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/48 (50%), Positives = 37/48 (77%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++ IL SVG E + +++ ++ E+ GKD+ +LIAAGREKL+S+P GGG
Sbjct: 23 IKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 47.6 bits (108), Expect = 3e-06
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 144
++KI+ SVG E D EK+ + + +DV +LIA GREK++++ GGG
Sbjct: 23 LKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGREKMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 46.4 bits (105), Expect = 6e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGG 141
++KIL SVG E D K+ + + + DV +LIAAGREK+S++ GG
Sbjct: 23 LKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 4 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 132
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 28 IEADAEKLKKVITELNGKDVEQL 96
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 1 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 123
VE +S+ DAE++ K++T+ VE L+ KLS
Sbjct: 53 VETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 140 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASAS 30
PP+ + S S P+ +S STS P SS S S + +
Sbjct: 43 PPSSLASSTSPPSTLSSSTSHPSSSTSPPSSLSCTGT 79
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 43 EKLKKVITELNGKDVEQLIAAGREKLSS 126
EKL +V+TE+ G D + + G +++
Sbjct: 1167 EKLDRVVTEITGNDAAECMTDGNRDIAT 1194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,382,689
Number of Sequences: 28952
Number of extensions: 43727
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -