Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31023.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    60   2e-10
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   3.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.8  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   4.8  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -3

Query: 506 LFISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPPPRTLSRYFDVTHATAQLAPT 327
           L I L  ++ +P++L  LI+GRD+ LV A   +RY S P P+T  R+FD    T +L PT
Sbjct: 471 LTICLAVRETMPLTLASLIIGRDVLLVSAVSYLRYKSLPAPKTFRRFFDFAIPTTELKPT 530

Query: 326 FISKV 312
            ISKV
Sbjct: 531 RISKV 535


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 306  SCSTSIGRHYAGVPSFWYVDHPALKVLCGITAASTIVSAVSY 181
            S   SI R +A +P    ++    ++LCG+ AAS   + + Y
Sbjct: 1240 SLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRY 1281


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 403 YRMTNPATTNAISRPTISSVNEIGXRSCQVREIKRVLRELYLPLDPR 543
           +RM++ +  +       + + E+   S   + I R L+E+Y PLDP+
Sbjct: 279 FRMSSSSLRHTNINFLYNELRELLPTSISRKGIIRYLKEIYKPLDPK 325


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 507 SLYLSHLAGPXTYFIDTANSWARYSIGCGWICHSIY 400
           S++ +H   P   +++ A SW +YS+  G +C  +Y
Sbjct: 35  SIFPTHYDQP---YLNEAPSWYKYSLESGLVCLYLY 67


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 307 VFTLLIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNPATTNAISRPTISS 459
           +F+LL K+G + +  CV        R G   I+++   ATT +I    I+S
Sbjct: 213 IFSLLSKIGPNLSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,648
Number of Sequences: 5004
Number of extensions: 46357
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)