Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31023.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836...    41   9e-04
07_03_0617 + 19992304-19992798,19992926-19993364,19993457-199936...    31   0.92 
07_03_0608 - 19924065-19924367,19924517-19924704,19924791-199252...    29   2.8  
01_06_1437 - 37358912-37359226                                         29   2.8  
07_03_0621 + 20025998-20026492,20026598-20027036,20027135-200273...    28   4.9  
07_03_0619 + 20009837-20010331,20010437-20010875,20010974-200111...    28   4.9  
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38...    27   8.6  

>01_06_0971 -
           33483015-33483071,33483282-33483315,33483590-33483684,
           33483769-33483843,33483925-33484010,33484256-33484307,
           33484381-33484455,33484554-33484620,33485699-33486159
          Length = 333

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = -3

Query: 500 ISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPPPRTLSRYFDVTHATA----QLA 333
           I++  +DL+   L  L+V RD+ L+V G V +  S    +  S + D  +  A    ++ 
Sbjct: 209 IAMVEKDLLHPGLVGLVVVRDL-LLVGGAVYKRASSLGWKWNS-WSDFVNLDAIHREKVK 266

Query: 332 PTFISKVNTAVQLLLVGTTLASPVFG 255
           P FISKVNT  QL+LV   L  P FG
Sbjct: 267 PLFISKVNTVFQLMLVAAALLQPEFG 292


>07_03_0617 +
           19992304-19992798,19992926-19993364,19993457-19993644,
           19993806-19994123
          Length = 479

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -3

Query: 497 SLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPP 387
           SLT +D++  ++ LL+ G + + V+  F++RY++  P
Sbjct: 267 SLTVEDIVDNAILLLLAGYETSSVLITFLLRYLANEP 303


>07_03_0608 -
           19924065-19924367,19924517-19924704,19924791-19925229,
           19925357-19925851
          Length = 474

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 497 SLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPP 387
           SLT +D++  ++ LLI G + + V+  F+IR ++  P
Sbjct: 267 SLTVEDIVDNAILLLIAGYETSSVLITFLIRQLANEP 303


>01_06_1437 - 37358912-37359226
          Length = 104

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 392 PPPRTLSRYFDVTHATAQLAPTFI 321
           PPPR L R   + H++ +L P F+
Sbjct: 60  PPPRALDRLISLRHSSLELLPLFL 83


>07_03_0621 +
           20025998-20026492,20026598-20027036,20027135-20027322,
           20027476-20027664
          Length = 436

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 497 SLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPP 387
           SLT +D++  ++ LL  G   + V+  F++RY++  P
Sbjct: 267 SLTVEDIVDNAIVLLTAGYGNSAVLITFLLRYLANDP 303


>07_03_0619 +
           20009837-20010331,20010437-20010875,20010974-20011161,
           20011315-20011620
          Length = 475

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 497 SLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPP 387
           SLT +D++  ++ LL  G   + V+  F++RY++  P
Sbjct: 267 SLTVEDIVDNAIVLLTAGYGNSAVLITFLLRYLANDP 303


>03_01_0046 -
           384444-384460,384649-384770,385144-385301,385379-385479,
           385748-385823,385983-386093,386165-386356,386729-387024,
           388299-388497
          Length = 423

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 476 IPISLTLLIVGRDIALVVAGFVIRYISXPPPR 381
           +P+S  LL  G   A V A F +  +S  PPR
Sbjct: 35  LPLSSPLLAAGAAAAAVTAAFSLSSLSFSPPR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,460,290
Number of Sequences: 37544
Number of extensions: 266808
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)