Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31023.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   6.6  
SB_21635| Best HMM Match : Lysine_decarbox (HMM E-Value=1.4)           27   8.7  
SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 27   8.7  

>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 367 YLLNVRGGGKLIYRMTNPATTNAISRPTISSVNEIG 474
           Y LNVR G + I R  NP+   A  RP +   N  G
Sbjct: 468 YPLNVRYGARDISRSKNPSGRMANIRPAVGPDNRAG 503


>SB_21635| Best HMM Match : Lysine_decarbox (HMM E-Value=1.4)
          Length = 569

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 154 TKEKNMNIVKYCEISLFPFRDY 89
           +KE +MN +K  E +L PFRD+
Sbjct: 218 SKEISMNDIKRLEAALIPFRDF 239


>SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 351 VCYIEIPTQRSRWWXAYISND 413
           V Y EIP +   WW  Y +ND
Sbjct: 624 VTYAEIPGKEHWWWDTYRTND 644


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 488 WQDLIPISLTLLIVGRDIALVVAGFVIRYISXPPPRTLSRY 366
           +Q   P+ L L+IVG    LV +GF I YI+ P   T   Y
Sbjct: 498 FQTSSPVLLILIIVGA--ILVYSGFAILYINPPTDVTCLVY 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,996
Number of Sequences: 59808
Number of extensions: 317735
Number of successful extensions: 631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)