Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31023.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical ...    85   4e-17
AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical ...    85   4e-17
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    30   1.4  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    30   1.4  
U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF003389-6|AAV58872.1|  222|Caenorhabditis elegans Hypothetical
           protein F23H11.9b protein.
          Length = 222

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 39/85 (45%), Positives = 60/85 (70%)
 Frame = -3

Query: 512 STLFISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPPPRTLSRYFDVTHATAQLA 333
           ST+FI++T+  LIP+ LT +++ RDI L+  GF  RY    PP +LSR+F+   ++ Q+ 
Sbjct: 101 STMFITMTYAGLIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLSRFFNPQVSSMQVV 160

Query: 332 PTFISKVNTAVQLLLVGTTLASPVF 258
           PT +SK+NT +Q+ LV  +L+SPVF
Sbjct: 161 PTMMSKINTVLQITLVALSLSSPVF 185


>AF003389-5|AAC71137.1|  246|Caenorhabditis elegans Hypothetical
           protein F23H11.9a protein.
          Length = 246

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 39/85 (45%), Positives = 60/85 (70%)
 Frame = -3

Query: 512 STLFISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPPPRTLSRYFDVTHATAQLA 333
           ST+FI++T+  LIP+ LT +++ RDI L+  GF  RY    PP +LSR+F+   ++ Q+ 
Sbjct: 125 STMFITMTYAGLIPLPLTSVVILRDICLIGGGFYKRYQVMSPPYSLSRFFNPQVSSMQVV 184

Query: 332 PTFISKVNTAVQLLLVGTTLASPVF 258
           PT +SK+NT +Q+ LV  +L+SPVF
Sbjct: 185 PTMMSKINTVLQITLVALSLSSPVF 209


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 421 ATTNAISRPTISSVNEIGXRSCQVREIKRVLRELYLPLD 537
           A T   SR    S  ++   SC++REI RV REL   LD
Sbjct: 801 AITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLD 839


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 421 ATTNAISRPTISSVNEIGXRSCQVREIKRVLRELYLPLD 537
           A T   SR    S  ++   SC++REI RV REL   LD
Sbjct: 801 AITEKKSRAGAPSFGDVEALSCELREIIRVYRELNEQLD 839


>U28409-3|AAN60500.1|  327|Caenorhabditis elegans Hypothetical
           protein T25D10.1 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 351 VCYIEIPTQRSRWWXAYISNDKSSH 425
           V ++ +P     WW  Y++ D +SH
Sbjct: 270 VVFLTVPYSTHGWWMGYLAKDDNSH 294


>U70856-2|AAB09164.1|  461|Caenorhabditis elegans Hypothetical
           protein F57F4.1 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 471 RYXVLPSERDKESATRTLSAIGSXKXPSLLIDL 569
           R  V+P   DKE  ++ LSA+G+ +   +L DL
Sbjct: 102 RKFVIPLSTDKEKQSQYLSAMGNVRIGKILEDL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,112
Number of Sequences: 27780
Number of extensions: 252424
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)