Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31023.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.0  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 546 LSXIQW-QIKFS*HSLYLSHLAGPXTYFIDTANSWAR 439
           ++ +QW ++  +  SL+  H+AGP    +D++ ++ R
Sbjct: 507 VNSVQWPRLNPNEKSLHYLHIAGPGKIQMDSSTNFGR 543


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 546 LSXIQW-QIKFS*HSLYLSHLAGPXTYFIDTANSWAR 439
           ++ +QW ++  +  SL+  H+AGP    +D++ ++ R
Sbjct: 507 VNSVQWPRLNPNEKSLHYLHIAGPGKIQMDSSTNFGR 543


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 237 LKVLCGITAASTIVSAVSYLVSKDT 163
           +  L  I+A+  I  A S LVSKD+
Sbjct: 242 INTLLSISASCVIAFATSALVSKDS 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,994
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)