Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31023.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase fam...    47   1e-05
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    31   0.58 
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik...    30   1.3  
At5g17300.1 68418.m02026 myb family transcription factor similar...    28   4.1  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    27   7.2  
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote...    27   7.2  
At5g36110.1 68418.m04351 cytochrome P450 family protein similar ...    27   9.5  

>At4g04870.1 68417.m00709 CDP-alcohol phosphatidyltransferase family
           protein similar to SP|Q07560 Cardiolipin synthetase (EC
           2.7.8.-) {Saccharomyces cerevisiae; contains Pfam
           profile PF01066: CDP-alcohol phosphatidyltransferase
          Length = 341

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
 Frame = -3

Query: 500 ISLTWQDLIPISLTLLIVGRDIALVVAGFVIRYISXPPP-RTLSRYFDVTHATAQ-LAPT 327
           +++  +DL+   L  +++ RD+ALV     +R ++     +T S +F++  ++ Q + P 
Sbjct: 216 VAMVQKDLLHPGLVGIVLLRDVALVGGAVYLRALNLDWKWKTWSDFFNLDGSSPQKVEPL 275

Query: 326 FISKVNTAVQLLLVGTTLASPVFG 255
           FISKVNT  QL LV   +  P FG
Sbjct: 276 FISKVNTVFQLTLVAGAILQPEFG 299


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 327 SRCKLCGCVCYIEIPTQRSRWWXAYISNDKSSHN 428
           S C +CG   +    T R+ WW A ++  +S HN
Sbjct: 214 SACHICGSQAWQTNDTSRNVWWLALLTMGESWHN 247


>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
           ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
          Length = 1450

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 4   LIIYLHYFV*LIK*TVLLMVNKILKTIKNNLEMGIEIFHNTSRYSYFF 147
           L++  +YFV + K   L+M   I  T+     MGI+I H  S  S  F
Sbjct: 536 LLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALF 583


>At5g17300.1 68418.m02026 myb family transcription factor similar to
           CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
           profile PF00249: Myb-like DNA-binding domain
          Length = 387

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 480 VLPSERDKESATRTLSAIGSXKXPSL 557
           V PSERD +S T  LS +GS    SL
Sbjct: 148 VSPSERDTQSPTSVLSTVGSEALCSL 173


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 319 LIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNP 420
           +++V  S    CV + Y+ N+  GG+ ++++  P
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEP 102


>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
           kinase, putative similar to leucine-rich repeat
           transmembrane protein kinase 2 GI:3360291 from [Zea
           mays]
          Length = 693

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 389 PPRTLSRYFDVTHATAQLAPTFISKVNTAVQLLL 288
           PP++LSR+ D+     Q+ P F   ++  V+ L+
Sbjct: 634 PPKSLSRFADIIALCVQVEPEFRPPMSEVVEALV 667


>At5g36110.1 68418.m04351 cytochrome P450 family protein similar to
           taxane 13-alpha-hydroxylase (GI:17148242) {Taxus
           cuspidata}; contains Pfam profile: PF00067: Cytochrome
           P450
          Length = 477

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 485 QDLIPISLTLLIVGRDIALVVAGFVIRYISXPP 387
           +DL    + LLI G D A +V  FV+ Y++  P
Sbjct: 275 EDLADKIIGLLIGGHDTASIVCTFVVNYLAEFP 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,973,784
Number of Sequences: 28952
Number of extensions: 224019
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)