Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31021.Seq
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66... 30 1.0
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 29 1.8
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701... 29 2.4
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 28 3.1
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 28 3.1
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 27 9.6
03_05_1053 - 29987908-29987985,29988096-29988152,29988229-299883... 27 9.6
03_01_0147 - 1170481-1171260,1171332-1171511 27 9.6
02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045 27 9.6
>08_01_0091 +
664913-664985,665281-665576,667197-667311,667901-667971
Length = 184
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
Q+ G FL G E+ RS + + SA R GE A+ +D+ +R +GK
Sbjct: 20 QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79
Query: 285 PAKGVTVPT 311
G T PT
Sbjct: 80 SNPGET-PT 87
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGH*GNSKCEVSXHQKWRT 371
G+G K+D++ K+ K K +P P T P K N + S + R+
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAKRRKNNEVPQDSPAMRTRS 405
>11_06_0549 +
24868344-24868930,24869740-24869957,24870018-24870175,
24870202-24870633,24870717-24871064
Length = 580
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 228 AQKEDQRSRKENKGKPEPKPAKGVTVPTRKGH*GNSKCEVSXHQKWRTTEG*G 386
A E R+ G+ PAKGVT P R+G G + + ++ T G G
Sbjct: 2 AATEAGGQRRRGSGRRGASPAKGVT-PERRGERGEASQRLGSEREGATAAGDG 53
>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
G+G K+D++ K+ K K +P P T P K
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAK 180
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
G+G K+D++ K+ K K +P P T P K
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAK 180
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 142 VGVVNRYALFLD-DETDPLDALKAREQXXXXXXXXXXXXXXXXXSLNPSPLKA*PFPPGR 318
+G N++ L +D D DP + A E+ + P+ L P PP +
Sbjct: 1 MGSKNQFDLLVDVDNDDPSHLIAAAEKKAAAAAASPKLASSPAPA--PAKLPTKPAPPAQ 58
Query: 319 GIKETQNVKSQXIKSGEQQKGKG 387
++E +N + +G G+G
Sbjct: 59 AVREARNYGAPRDGAGRGGPGRG 81
>03_05_1053 -
29987908-29987985,29988096-29988152,29988229-29988344,
29988900-29989038,29989430-29989558,29990218-29990325,
29990418-29990645
Length = 284
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGH 323
++ D+R+R+ +G+ E PAK P R+ H
Sbjct: 79 RRRDRRNRRSGRGEAEDAPAKAAAEP-RETH 108
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 180 IVQEKSVSVHYSHTVGILHCDPLDDLITQY 91
+ QE+ V++ +HTVG HC D + +
Sbjct: 170 LTQEEMVTLSGAHTVGRAHCTSFSDRLYNF 199
>02_01_0463 - 3336485-3336921,3337415-3337454,3338794-3339045
Length = 242
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 192 RIGLIVQEKSVSVHYSHTVGILHCDPLDD 106
RI L+ Q ++ + +HT+GI HC D
Sbjct: 84 RITLVNQIQTTLLACAHTIGIAHCSSFAD 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,386
Number of Sequences: 37544
Number of extensions: 192266
Number of successful extensions: 572
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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