Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31021.Seq
         (459 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051984-1|AAK93408.1|  838|Drosophila melanogaster LD45365p pro...    29   4.0  
AF220364-1|AAF37265.1|  838|Drosophila melanogaster Plenty of SH...    29   4.0  
AE013599-2508|AAF57833.1|  838|Drosophila melanogaster CG4909-PA...    29   4.0  
AY119584-1|AAM50238.1|  534|Drosophila melanogaster LD14064p pro...    27   9.2  
AE014296-1373|AAS65055.1|  534|Drosophila melanogaster CG7942-PB...    27   9.2  
AE014296-1372|AAF50486.1|  534|Drosophila melanogaster CG7942-PA...    27   9.2  

>AY051984-1|AAK93408.1|  838|Drosophila melanogaster LD45365p
           protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVP 308
           ++A AG+G +K ++   +  + KP+P PA+ V  P
Sbjct: 78  QNAAAGKGEEKGEETETQPERAKPQP-PAESVAPP 111


>AF220364-1|AAF37265.1|  838|Drosophila melanogaster Plenty of SH3s
           protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVP 308
           ++A AG+G +K ++   +  + KP+P PA+ V  P
Sbjct: 78  QNAAAGKGEEKGEETETQPERAKPQP-PAESVAPP 111


>AE013599-2508|AAF57833.1|  838|Drosophila melanogaster CG4909-PA
           protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVP 308
           ++A AG+G +K ++   +  + KP+P PA+ V  P
Sbjct: 78  QNAAAGKGEEKGEETETQPERAKPQP-PAESVAPP 111


>AY119584-1|AAM50238.1|  534|Drosophila melanogaster LD14064p
           protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTV 305
           +S+ +   ++ ED+   K  K  P P P+K V V
Sbjct: 247 ESSSSSSSSEDEDEEREKVKKAAPVPPPSKSVPV 280


>AE014296-1373|AAS65055.1|  534|Drosophila melanogaster CG7942-PB,
           isoform B protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTV 305
           +S+ +   ++ ED+   K  K  P P P+K V V
Sbjct: 247 ESSSSSSSSEDEDEEREKVKKAAPVPPPSKSVPV 280


>AE014296-1372|AAF50486.1|  534|Drosophila melanogaster CG7942-PA,
           isoform A protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTV 305
           +S+ +   ++ ED+   K  K  P P P+K V V
Sbjct: 247 ESSSSSSSSEDEDEEREKVKKAAPVPPPSKSVPV 280


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,108
Number of Sequences: 53049
Number of extensions: 326108
Number of successful extensions: 953
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)