Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31019.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    30   0.22 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   0.90 
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   2.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   2.7  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   3.6  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   3.6  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   3.6  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   8.4  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.4  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 11  IVFYIILVVQARTLIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 157
           I FY+     AR +I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 308 IPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = +1

Query: 313 DLPLAGFHGEVLPGGQRSLFILFTXFHERRAQFVNIGANLFICAATRRFVFXDY 474
           DL +     E+L  G   L I  T F E R+ F     N  +CAA R+FV  DY
Sbjct: 114 DLGIKDIASEMLEMGSHYLSI--TAFIESRSHFEYGFVNHALCAALRKFVM-DY 164


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 242 FYKAYSRTLTTSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLXFMNVVPN 409
           FY  +  T+ +   R+HQ +   E  +  DF ++ ++    +  F SL  +++V N
Sbjct: 101 FYIDFCSTIDSIKWRMHQLVKTVEDRMRNDFDSKGYVCPFCNKKFSSLDVLSLVTN 156


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 250 FVECRHWIVKQWEHVSNGTQHGDYADPPKSYVY--FIGNDV 134
           +VE R+ ++   EHV +  Q+ DY++   S +Y  F+  DV
Sbjct: 493 WVEARNAMLMAQEHVFDIMQNSDYSEFVNSEIYYRFLAQDV 533


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 368 YLFYSLXFMNVVPNLLILVPIFL 436
           YL +   F+ V+PN+ +L+P F+
Sbjct: 97  YLLFC-QFLTVIPNIAVLIPCFI 118


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 157 RSSLGGPRNHRAVYHWIR 210
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 317 SLSRDFMARFFLEDSAHYLFYSLXFMNVVPNLL 415
           S S++ +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 208 RVPIV*QSSVGILQSVLANADDF 276
           RVP+  ++++G ++ +LAN  D+
Sbjct: 106 RVPVFEKNAIGFVKKILANFKDY 128


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 154 YFIGNDVSFQGWDAFWWTSVAC 89
           Y  GN  ++ GW    W+ + C
Sbjct: 231 YIFGNFENYSGWTNMGWSFILC 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,356
Number of Sequences: 5004
Number of extensions: 40395
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)