Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31019.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0313 + 3447065-3448204 30 1.2
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 1.6
09_04_0101 + 14611622-14613133 29 2.1
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 28 3.6
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 4.8
10_08_0950 + 21764902-21765912 28 4.8
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47... 27 6.3
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 27 6.3
11_08_0098 - 28334865-28336114,28336228-28336357 27 8.4
>10_01_0313 + 3447065-3448204
Length = 379
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 200 IGYVFPLFNNPVSAFYKAYSRTLTTSALRLHQRIPAREISL 322
+G+ FP +PV +F + T L H+ +P REI L
Sbjct: 80 LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGL 120
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGND-VSFQGW 119
VK W+HVSNG + + + K + + G++ S++GW
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAASWRGW 208
>09_04_0101 + 14611622-14613133
Length = 503
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 236 SAFYKAYSRTLTTS-ALRLHQRIPAREISLSRDFMARFF---LEDSAHYLFYSLXFMNVV 403
+A YS+ T S ALRL +R+PAR + + F L A LF + ++
Sbjct: 247 TAAVNMYSKCATVSYALRLFERMPARNVWTWTAMIVGFAQNGLAQEALELFDRMKLSKII 306
Query: 404 PNLLILVPIFLFALLHA 454
PN + + + L A HA
Sbjct: 307 PNYVTFLGL-LCACSHA 322
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 237 DTGLLNNGNTYPMVHSTVITRTPQRATSILL 145
DT +N+GNT P + T+ + TP + T L+
Sbjct: 974 DTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 131
VK W+HVSNG + + + K + + G++++
Sbjct: 146 VKDWDHVSNGDKEVLWKELKKIFQFLDGSEIA 177
>10_08_0950 + 21764902-21765912
Length = 336
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 192 CVPLDTCSHCLTIQCRHSTKRTRER*RLQR 281
C T +H +QCRH ++ R+R R +R
Sbjct: 93 CGRFPTATHKSGVQCRHKIEKLRKRYRAER 122
>09_01_0027 -
469856-470773,470780-471261,471296-471408,471453-472003,
472089-472328
Length = 767
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVS 131
VK W+HVSNG + + + K + + G++V+
Sbjct: 172 VKDWDHVSNGDKEVLWKELKKIFQFTDGSEVA 203
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 226 VKQWEHVSNGTQHGDYADPPKSYVYFIGNDVSFQGWDAF 110
VK W+HVSNG + + + K + + G++ + WD F
Sbjct: 164 VKDWDHVSNGDKEVLWKELKKIFQFPDGSEAA---WDDF 199
>11_08_0098 - 28334865-28336114,28336228-28336357
Length = 459
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 305 AREISLSRDFMARFFLEDSAHYLFYSLXFMNVVPN 409
A E+ L R+F AR+ S Y F+ + N + N
Sbjct: 399 ADEVLLERNFSARYSSSSSCRYQFHKDDYSNSIAN 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,284
Number of Sequences: 37544
Number of extensions: 278774
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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