Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31019.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                 28   3.7  
SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)          27   6.5  

>SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 338

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +2

Query: 248 KAYSRTLTTSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLXFMNVVPNL 412
           +A+ R LT+++L  H+R+  +   +S   +  F+L  S ++L  +L  +N  P L
Sbjct: 243 RAWMRRLTSNSL--HERVNYKVFKISLAIVLAFYLCYSCYWLQVTLCTLNEPPRL 295


>SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 SPCCVPLDTCSHCLTIQCRHSTKRTRER*RLQRCGYIKEFQH 308
           SP C+P   CSH  + +  H T       R++ CG+ + +++
Sbjct: 53  SPSCIPDSLCSHSAS-RASHQTHSHTPYLRMRCCGWSRVYRN 93


>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
          Length = 951

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 362 RCPPGRTSP*NPARGRSLVLEFFDVAAALKSSA 264
           RCPPGR  P  P + + LV   FD+   +K  +
Sbjct: 85  RCPPGRGGPILPVKTK-LVPSLFDIDLEVKKGS 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,760
Number of Sequences: 59808
Number of extensions: 305692
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)