Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31019.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical... 91 5e-19
Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical p... 31 0.61
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.5
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.5
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.5
Z71185-12|CAA94906.3| 460|Caenorhabditis elegans Hypothetical p... 28 3.3
AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine re... 27 7.6
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 27 7.6
AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine re... 27 7.6
Z81070-3|CAB02998.1| 408|Caenorhabditis elegans Hypothetical pr... 27 10.0
U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical p... 27 10.0
U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical p... 27 10.0
AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical ... 27 10.0
AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical ... 27 10.0
AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical ... 27 10.0
>AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical
protein Y37D8A.17 protein.
Length = 271
Score = 90.6 bits (215), Expect = 5e-19
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Frame = +2
Query: 104 PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKAYSRTLTTS 277
PP ++ ++ AN ++ L+ RV+TV + Y+ P P SA+YK ++ + T
Sbjct: 31 PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90
Query: 278 ALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLXFMNVVPNLLILVPIFLFALLHAA 457
ALRLH RI + +L+ F+ R +EDS HYL YS+ F+ P + +P+ ++A LHA
Sbjct: 91 ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149
Query: 458 SYSXTILDXLGQXS 499
++ IL G S
Sbjct: 150 TFMTKILRETGHTS 163
>Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical
protein T11F9.18 protein.
Length = 311
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 224 NNPVSAFYKAYSRTLTTSAL-RLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLXFMNV 400
+ P++A Y S + L +L + R ISL R+F+ +++ + H +F S+
Sbjct: 201 SQPLAAVYFGLSVYASKLGLQKLKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIF 260
Query: 401 VPNLLILVPIFLFALLHA 454
+ +I +P + +L A
Sbjct: 261 FLSFIIWIPSNMSYILTA 278
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 61 NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 180
+ YGR ++SRR + ++ PS S+ H N R+SL P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
protein B0240.3 protein.
Length = 1093
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 271 DFSAAATSKNSSTRDLPLAGFHGEV 345
+F +TS +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 40 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 144
ST + LN Y ++ WS +P + H C
Sbjct: 67 STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101
>Z71185-12|CAA94906.3| 460|Caenorhabditis elegans Hypothetical
protein C35A5.3 protein.
Length = 460
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 409 FVNIGANLFICAATRRFVFXDYP*XSWSK 495
FV++G ++FI A F+F D P SW++
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444
>AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine
receptor, class n protein1 protein.
Length = 361
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 296 RIPAREISLSRDFMARFFLEDSAHYLFYSLXFMNVVPNLLILVPIFLFALLHAASY 463
R+ + I ++ M+ E H +L F N++P ++I P+FL A SY
Sbjct: 228 RLVWKAIDRRKNNMSFKSYETHRHLTLLAL-FQNLIPAVVIAFPVFLVAFSFVMSY 282
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 377 YSLXFMNVVPNLLILVPIFLFA 442
+ L F+++ NLLI +P+F FA
Sbjct: 12 FCLSFVSICLNLLIFIPVFRFA 33
>AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine
receptor, class x protein5 protein.
Length = 306
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 377 YSLXFMNVVPNLLILVPIFLFA 442
+ L F+++ NLLI +P+F FA
Sbjct: 12 FCLSFVSICLNLLIFIPVFRFA 33
>Z81070-3|CAB02998.1| 408|Caenorhabditis elegans Hypothetical
protein F26E4.4 protein.
Length = 408
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 187 GDYADPPKSYVYFIGNDVSFQGWDAFW 107
GD+ K + SF+GWDA W
Sbjct: 99 GDHNKEGKKEEKNVAGKASFEGWDALW 125
>U13070-20|AAN63418.1| 641|Caenorhabditis elegans Hypothetical
protein F01F1.1c protein.
Length = 641
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +1
Query: 7 FHSILYNFSCPSTNFNTLNQYGRSKSASRRHWSTKRHP 120
++ +N++ P N N YGR + +W+ ++ P
Sbjct: 98 YNQASFNYAPPPPPQNWNNGYGRGRGGGANNWNQQQRP 135
>U13070-18|AAC46635.2| 646|Caenorhabditis elegans Hypothetical
protein F01F1.1a protein.
Length = 646
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +1
Query: 7 FHSILYNFSCPSTNFNTLNQYGRSKSASRRHWSTKRHP 120
++ +N++ P N N YGR + +W+ ++ P
Sbjct: 103 YNQASFNYAPPPPPQNWNNGYGRGRGGGANNWNQQQRP 140
>AF100673-3|ABA00151.1| 950|Caenorhabditis elegans Hypothetical
protein Y66H1B.2c protein.
Length = 950
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 274 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFT 384
F R L LA FHG+ +P G+ F + T
Sbjct: 628 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLT 664
>AF100673-2|AAU05553.1| 899|Caenorhabditis elegans Hypothetical
protein Y66H1B.2b protein.
Length = 899
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 274 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFT 384
F R L LA FHG+ +P G+ F + T
Sbjct: 577 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLT 613
>AF100673-1|AAP13733.1| 897|Caenorhabditis elegans Hypothetical
protein Y66H1B.2a protein.
Length = 897
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 274 FSAAATSKNSSTRDLPLAGFHGEVLPGGQRSLFILFT 384
F R L LA FHG+ +P G+ F + T
Sbjct: 575 FKVYIAPATGEVRKLELAQFHGQGIPAGKAFTFTVLT 611
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,243
Number of Sequences: 27780
Number of extensions: 225638
Number of successful extensions: 851
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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