Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31019.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    30   0.75 
At5g55090.1 68418.m06867 protein kinase family protein contains ...    27   5.3  
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    27   5.3  
At1g30475.1 68414.m03725 expressed protein                             27   7.0  

>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 145 GNDVSFQGWDAFWWTSVAC 89
           GN V  QGW+  WW+   C
Sbjct: 38  GNKVCTQGWECSWWSKYCC 56


>At5g55090.1 68418.m06867 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 448

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 199 HWIRVPIV*QSSVGILQSVLANADDFSAAATSKNSST 309
           +WIR PI+ + S   +   + N+ DF A  +++ SS+
Sbjct: 5   NWIRGPIIGRGSTATVSLGITNSGDFFAVKSAEFSSS 41


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  NFNTLNQYGRSKSASRRHWSTKRHPSLE 129
           +F +  Q G   S+S++HW  +R P  E
Sbjct: 401 HFASWRQLGHLLSSSKKHWGMRRQPKSE 428


>At1g30475.1 68414.m03725 expressed protein
          Length = 162

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 40  STNFNTLNQYGRSKSASRRHWSTKRHPSLESS 135
           ++N N+  +Y  S S  R+ WS  + PSL+ +
Sbjct: 26  TSNGNSQRRYPTSVSMQRQPWSQSKFPSLQDA 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,427,509
Number of Sequences: 28952
Number of extensions: 210847
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)