Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31018.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    23   2.0  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.0  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   2.0  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.0  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 355 LLFLHQEPQISSSHQSLSFLWHHRSQMHRCFLRHTIFSRRI 233
           + F   EP+ S  HQ L+ L    S + +    H +  +R+
Sbjct: 116 ITFYRDEPRFSQPHQILTLLMDIDSLITKWRYNHVLMVQRM 156


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 355 LLFLHQEPQISSSHQSLSFLWHHRSQMHRCFLRHTIFSRRI 233
           + F   EP+ S  HQ L+ L    S + +    H +  +R+
Sbjct: 276 ITFYRDEPRFSQPHQILTLLMDIDSLITKWRYNHVLMVQRM 316


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 355 LLFLHQEPQISSSHQSLSFLWHHRSQMHRCFLRHTIFSRRI 233
           + F   EP+ S  HQ L+ L    S + +    H +  +R+
Sbjct: 276 ITFYRDEPRFSQPHQILTLLMDIDSLITKWRYNHVLMVQRM 316


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 110 VAPEEVTSTEPKESPVKKSPAKKVEAAE 193
           VAPEE +S     S +  SPA  + + +
Sbjct: 9   VAPEESSSEVTSSSALVMSPANSLASTD 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,677
Number of Sequences: 336
Number of extensions: 2364
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)