Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31018.Seq
(598 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.7
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 4.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 4.0
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 21 9.2
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 21 9.2
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 21 9.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 370 FGTPISTGRPATVEDTSASLPL 391
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 370 FGTPISTGRPATVEDTSASLPL 391
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 370 FGTPISTGRPATVEDTSASLPL 391
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 370 FGTPISTGRPATVEDTSASLPL 391
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 370 FGTPISTGRPATVEDTSASLPL 391
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 370 FGTPISTGRPATVEDTSASLPL 391
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 438 FGTPISTGRPATVEDTSASLPL 459
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 261 FGTPFSAGESSGASSVPFSLPL 196
FGTP S G + SLPL
Sbjct: 438 FGTPISTGRPATVEDTSASLPL 459
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.2 bits (45), Expect = 4.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 113 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENG 214
+P ++ P S PAK AA K NG
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 464 MHQCPLEFNSHPHIPSYKCITPILIASY 547
+H P +SH P ++ TP+ +SY
Sbjct: 426 IHATPHHHHSHAATPHHQHSTPLAHSSY 453
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -1
Query: 211 ILFAITFCSFNFLSWRLL 158
I+F + F FN L W +
Sbjct: 450 IVFPVAFIIFNILYWSFI 467
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 77 TMADAAVDKKEVAPEEVTSTEPKESPV 157
T V +A E S EPK SP+
Sbjct: 183 TSGPGVVSNPMIAELETLSVEPKVSPM 209
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 77 TMADAAVDKKEVAPEEVTSTEPKESPV 157
T V +A E S EPK SP+
Sbjct: 183 TSGPGVVSNPMIAELETLSVEPKVSPM 209
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,889
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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