Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31016.Seq
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   115   4e-27
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   4.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   6.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   6.1  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.1  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    25   8.1  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  115 bits (276), Expect = 4e-27
 Identities = 50/83 (60%), Positives = 70/83 (84%)
 Frame = +3

Query: 6   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
             KG++ GK+  VYRKKF++ IE
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIE 82



 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 370
           + REKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 84  VTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 293 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 415
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 415 VFTLVFAKCSQSALCSAIEDCFAVFIH 335
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 223 CIVKSLLYTLRDSKRKGQWCNSICRHSP 306
           C  K LLY  R   R  +W N I   SP
Sbjct: 388 CCAKILLYARRQLTRMARWNNLIDDSSP 415


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 281 HHWPFLFESLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVF 156
           ++W F   S    N+ F +H+H    L+  + S Y++ F+ F
Sbjct: 20  NYWHFWLRSFMSNNRKFLVHIH----LIPHLNSLYSICFLGF 57


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 175 LYVDTTKANRLAK*CRCIVKSLLYTLR 255
           LY D  +    A+ C C+V++LLY  R
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKR 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,985
Number of Sequences: 5004
Number of extensions: 42946
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)