Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31016.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   7e-33
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   1.6  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.1  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            28   4.7  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   6.3  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           27   6.3  
SB_55015| Best HMM Match : DUF457 (HMM E-Value=9.6)                    27   8.3  
SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)                 27   8.3  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 27   8.3  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  136 bits (330), Expect = 7e-33
 Identities = 61/89 (68%), Positives = 79/89 (88%)
 Frame = +3

Query: 6   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 186 HYKGQQVGKVMQVYRKKFVVYIEGFKEKR 272
           H+K QQVGKV+QVYRKK+V++I+  + ++
Sbjct: 61  HFKSQQVGKVIQVYRKKWVIHIDRIQREK 89



 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 34/48 (70%), Positives = 39/48 (81%)
 Frame = +2

Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 400
           IQREKANGAT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 85  IQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 6   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 158
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 277 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 441
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 451 LRGLHGCGSFLGVFTLVFAKCSQS 380
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 12  FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 164
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +3

Query: 72  SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 233
           + ++++   + + K LR+    K+MP R+D+++Q  V    YK ++VG+  +  R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 65  CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 160
           CS   K  ++ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 409 TLVFAKCSQSALCSAIEDCFAVFI 338
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 368 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWPFLF 261
           C  G +  +   ST  +  L+G+ CR M+L HWP  F
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWF 361


>SB_55015| Best HMM Match : DUF457 (HMM E-Value=9.6)
          Length = 140

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 290 MLLHHWPFLFESLNVYNKLFTIH 222
           +LLHHW F  +SL V+   F +H
Sbjct: 94  LLLHHWEFSSQSLTVFG--FDLH 114


>SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
          Length = 367

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 275 WPFLFESLNVYNKLFTIHLHHFANLLAFVVSTY 177
           WP   E  N+Y K +TI L  F  LL  V+ TY
Sbjct: 188 WPDYREG-NIYMKAYTIGLAIFWYLLPLVIITY 219


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 290 MLLHHWPFLFESLNVYNKLFTIH 222
           +LLHHW F  +SL V+   F +H
Sbjct: 153 LLLHHWEFSSQSLTVFG--FDLH 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,432,260
Number of Sequences: 59808
Number of extensions: 346499
Number of successful extensions: 1017
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)