Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31016.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    99   1e-21
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    99   1e-21
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...    99   1e-21
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   3.2  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z79754-12|CAD57695.1|  440|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z79754-11|CAB02100.1|  478|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 46/83 (55%), Positives = 64/83 (77%)
 Frame = +3

Query: 6   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
            +KG   G+V++ YRKKFV++I+
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHID 82



 Score = 35.9 bits (79), Expect = 0.016
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 257 IQREKANGATAYVGIHPSK 313
           I REKANG+T ++GIHPSK
Sbjct: 84  ITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 46/83 (55%), Positives = 64/83 (77%)
 Frame = +3

Query: 6   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
            +KG   G+V++ YRKKFV++I+
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHID 82



 Score = 35.9 bits (79), Expect = 0.016
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 257 IQREKANGATAYVGIHPSK 313
           I REKANG+T ++GIHPSK
Sbjct: 84  ITREKANGSTVHIGIHPSK 102


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 46/83 (55%), Positives = 64/83 (77%)
 Frame = +3

Query: 6   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 185
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 186 HYKGQQVGKVMQVYRKKFVVYIE 254
            +KG   G+V++ YRKKFV++I+
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHID 82



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 30/53 (56%), Positives = 41/53 (77%)
 Frame = +2

Query: 257 IQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 415
           I REKANG+T ++GIHPSK  I KLK++KDR+A+++R+A GR    G  KGK+
Sbjct: 84  ITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
           protein E03G2.2 protein.
          Length = 1503

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 287 LLHHWPFLFESLNVYNKLFTIHLHHFANLLAFVVST 180
           LL  W  LFE  NV   LF I   H   LLA +++T
Sbjct: 74  LLAVWESLFEHKNVTADLFIIPFFHSFTLLALLIAT 109


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 485 FKNFIYLKNYLFKRPPWLWQFPRCI 411
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 449 KRPPWLWQFPRCIYPCLCQVQPVC 378
           ++ PW ++    +YP LC++  +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272


>Z50741-2|CAA90610.1|  383|Caenorhabditis elegans Hypothetical
           protein F55G7.2 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 9   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 188
           KFN+ V   RR N K+    P H  +   +  +++++ +     S+P  K      +  H
Sbjct: 94  KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148

Query: 189 YKG 197
           YKG
Sbjct: 149 YKG 151


>U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical
           protein D2021.8 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -2

Query: 206 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 102
           NLL  A VV ++NL+ ++ A +HG ++E +   L+QG
Sbjct: 11  NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46


>Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical
           protein F58G1.2 protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 485 FKNFIYLKNYLFKRPPWLWQFPRCI--YPCLCQVQPVCPLLCDRGLLC 348
           F+N I   N+L K+ P   +F +C+  + CL     +    CD   LC
Sbjct: 238 FRNDISFNNHLTKKHPECAEFVQCLHCFKCLPSAADLPTHDCDLTYLC 285


>Z79754-12|CAD57695.1|  440|Caenorhabditis elegans Hypothetical
           protein F25H2.12b protein.
          Length = 440

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 472 FILKTICLRGLHGCGSFLGVFTLVFAKCSQSALCSAIEDCF 350
           F + +  L GLH CG F      VF K  +S        C+
Sbjct: 198 FAVNSAILVGLHCCGDFSSTILKVFQKSEKSKALVLFGCCY 238


>Z79754-11|CAB02100.1|  478|Caenorhabditis elegans Hypothetical
           protein F25H2.12a protein.
          Length = 478

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 472 FILKTICLRGLHGCGSFLGVFTLVFAKCSQSALCSAIEDCF 350
           F + +  L GLH CG F      VF K  +S        C+
Sbjct: 236 FAVNSAILVGLHCCGDFSSTILKVFQKSEKSKALVLFGCCY 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,365,974
Number of Sequences: 27780
Number of extensions: 253077
Number of successful extensions: 748
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)