Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31015.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 144 9e-36
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 143 1e-35
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 31 0.073
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.1
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 6.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 6.3
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.4
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 8.4
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 144 bits (348), Expect = 9e-36
Identities = 75/141 (53%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTXRAAMERENVNQFV-DVLXTPISRSWALVIVRKGAX 380
FPM QGVL RVRLL+ RA H R + E + V + AL IV++G
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119
Query: 381 EIPGLTDGNVPRRLGPKRVPK 443
+IPGLTD VP+RLGPKR K
Sbjct: 120 DIPGLTDVTVPKRLGPKRASK 140
Score = 77.4 bits (182), Expect = 1e-15
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +2
Query: 260 GHSCYRXRRDGERKRKSVRGCIXDANLSVLGSCYCAQGCPXNSWID*WKCTPPSR--SQT 433
GH CYR RRDGERKRKSVRGCI +L+VL QG + T P R +
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLT--DVTVPKRLGPKR 137
Query: 434 CSKIRKLFNLSKXDDVRRYVVK 499
SKIR+ FNLSK DDVR++V++
Sbjct: 138 ASKIRRFFNLSKEDDVRQFVIR 159
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 143 bits (347), Expect = 1e-35
Identities = 74/141 (52%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTXRAAMERENVNQFV-DVLXTPISRSWALVIVRKGAX 380
FPM QGVL RVRLL+ RA H R + E + V + AL I+++G
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119
Query: 381 EIPGLTDGNVPRRLGPKRVPK 443
+IPGLTD VP+RLGPKR K
Sbjct: 120 DIPGLTDVTVPKRLGPKRASK 140
Score = 77.4 bits (182), Expect = 1e-15
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +2
Query: 260 GHSCYRXRRDGERKRKSVRGCIXDANLSVLGSCYCAQGCPXNSWID*WKCTPPSR--SQT 433
GH CYR RRDGERKRKSVRGCI +L+VL QG + T P R +
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLT--DVTVPKRLGPKR 137
Query: 434 CSKIRKLFNLSKXDDVRRYVVK 499
SKIR+ FNLSK DDVR++V++
Sbjct: 138 ASKIRRFFNLSKEDDVRQFVIR 159
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 31.5 bits (68), Expect = 0.073
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 404 SISQSRNFXGTLAHNNKSPRPRDWRXQ 324
SIS S++F +L++ N+S +P DW Q
Sbjct: 175 SISNSKSFGTSLSYYNRSSKPSDWNQQ 201
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 150 DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTXRAAMERENVNQFVDVLX 329
DEW GG DK G ++ +L R+ +++ + +E+E ++ V+
Sbjct: 1055 DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIK 1114
Query: 330 TPIS 341
P+S
Sbjct: 1115 CPLS 1118
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 44 PGNGMPEVVRSGGRAQASYLLR 109
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +2
Query: 239 CSSSDAKGHSCYRXRRDGERKRKSVRGCIXDANLSVLGSCYCAQG 373
C G CY R+ V+GC + + G+C+C G
Sbjct: 283 CEGDTCSGLPCYVDPREN-----GVQGCPEGSPIGAGGACFCVVG 322
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 219 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 61
P+SS I H H+P + D+ R C F++ +E + P + S
Sbjct: 970 PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 8.4
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +3
Query: 45 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 224
P LFE + Y +R+ + ++L EW G++ V D + + +
Sbjct: 319 PRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREM 377
Query: 225 LTNSRV-----RLLMQRATHVTXRAAMERENVNQFVD 320
L +++ + L++R + A ++EN F D
Sbjct: 378 LQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,377
Number of Sequences: 5004
Number of extensions: 37350
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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