Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31015.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 142 1e-34
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 139 1e-33
11_01_0125 + 1018059-1018403 29 2.7
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 28 3.6
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 3.6
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 6.3
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 6.3
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 27 8.4
06_03_0395 - 20354713-20355570 27 8.4
04_01_0200 + 2400929-2402161 27 8.4
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 8.4
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 142 bits (345), Expect = 1e-34
Identities = 75/152 (49%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTXRAAMERENVNQFVDVLXTPISRSWA---LVIVRKG 374
FPMKQGVLT+ RVRLL+ R T R R+ + V +S+ + LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT-PCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 375 AXEIPGLTDGNVPRRLGPKRVPKSVSCSTLAK 470
++PGLTD PR GPKR K LAK
Sbjct: 120 DNDLPGLTDTEKPRMRGPKRASKIRKLFNLAK 151
Score = 65.7 bits (153), Expect = 2e-11
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Frame = +2
Query: 257 KGHSCYRX--RRDGERKRKSVRGCIXDANLSVLGSCYCAQG---CPXNSWID*WKCTPPS 421
+G C+R RRDGER+RKSVRGCI +LSV+ +G P + + + P
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Query: 422 RSQTCSKIRKLFNLSKXDDVRRYV 493
R+ SKIRKLFNL+K DDVR+YV
Sbjct: 139 RA---SKIRKLFNLAKDDDVRKYV 159
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 139 bits (336), Expect = 1e-33
Identities = 73/152 (48%), Positives = 94/152 (61%), Gaps = 3/152 (1%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTXRAAMERENVNQFVDVLXTPISRSWA---LVIVRKG 374
FPMKQGVLT RVRLL+ R T R R+ + V +S+ + LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT-PCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 375 AXEIPGLTDGNVPRRLGPKRVPKSVSCSTLAK 470
++PGLTD PR GPKR K L+K
Sbjct: 120 ENDLPGLTDTEKPRMRGPKRASKIRKLFNLSK 151
Score = 66.9 bits (156), Expect = 8e-12
Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Frame = +2
Query: 257 KGHSCYRX--RRDGERKRKSVRGCIXDANLSVLGSCYCAQG---CPXNSWID*WKCTPPS 421
+G C+R RRDGER+RKSVRGCI +LSV+ +G P + + + P
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 422 RSQTCSKIRKLFNLSKXDDVRRYV 493
R+ SKIRKLFNLSK DDVR+YV
Sbjct: 139 RA---SKIRKLFNLSKDDDVRKYV 159
>11_01_0125 + 1018059-1018403
Length = 114
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRXRRDGERKRKSVRGC 322
+EG+ RWR+ AR RP + S G + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 236 PCSSSDAKGHSCYRXRRDGERKRKSVRGCIXDANLSVLGSC 358
P SS GH C RR G+R I ++ V+G C
Sbjct: 117 PSSSHPLIGHMCVTFRRTGDRFGMIPMSAIAACDVKVIGLC 157
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 230 KQPCSSSDAKGHSCYRXRRDGERKRK 307
K PCSS+ G C+ R + KR+
Sbjct: 14 KSPCSSAGGGGRGCHNERGSADHKRR 39
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 HKL-RIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRA 263
HKL + Y +M +EVE D +W+ Y ++ G K PM++ + T ++ Q A
Sbjct: 190 HKLYKRAYHPKMISEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQWA 246
Query: 264 THVT 275
T V+
Sbjct: 247 TLVS 250
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 149
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 258 FASEDEHGCLSGRPVSSGILACRCRQRHEVHSPSIHR-LTDQPLLRRPCAFR 106
FA E EHG + R + + A + H P I R + +Q + C R
Sbjct: 399 FAQELEHGQIKRRFIKRLVDALNANMKQNAHCPGIRRVILEQSIYMMECNSR 450
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 255 ASEDEHGCLSGRPVSSGI-LACRCRQRHEVHSPSIHR 148
A+ EH S P S L RC++RH +HS HR
Sbjct: 33 AAAVEHSATSPSPSSPRTRLFPRCQRRHRLHSHGRHR 69
>04_01_0200 + 2400929-2402161
Length = 410
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 218 GRPDKQPCSSSDAKGHSCYRXRRDGERKRKSVRGCIXD 331
GRP + + KG +RDG +K ++V G I D
Sbjct: 4 GRPLESVLVAPGVKGKKVLAFKRDGLKKNEAVTGLIHD 41
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 113 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 9
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,165,591
Number of Sequences: 37544
Number of extensions: 290411
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -