Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31015.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              117   5e-27
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.011
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              31   0.53 
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   2.8  
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  117 bits (282), Expect = 5e-27
 Identities = 60/116 (51%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
 Frame = +3

Query: 126 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRA-THVTXRAAMEREN 302
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+ +  +    R   ER+ 
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 303 VNQFVDVLXTPISRSWALVIVRKGAXEIPGLTDGNVPRRLGPKRVPKSVSCSTLAK 470
            +    ++ + +S   +LVIV+KG  +IPGLTD  +PRRLGPKRV K      L+K
Sbjct: 62  KSVRGCIVDSQLS-VLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSK 116



 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 55/126 (43%), Positives = 69/126 (54%), Gaps = 11/126 (8%)
 Frame = +2

Query: 155 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRXRRDGERKRK 307
           + G C    W+    RI    D+ G P KQ   ++       +KGHSCYR RR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 308 SVRGCIXDANLSVLGSCYCAQGCPXNSWID*WKCTPPSR--SQTCSKIRKLFNLSKXDDV 481
           SVRGCI D+ LSVL      +G      +     T P R   +   KIRK+FNLSK DDV
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLT--DNTIPRRLGPKRVGKIRKMFNLSKEDDV 120

Query: 482 RRYVVK 499
           R+YV++
Sbjct: 121 RQYVIR 126


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 251 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 102
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 413 GYISISQSRNFXGTLAHNNKSPRPRDWRXQYIHELIYVFSLHR-GAXCNMSGPLHQKT 243
           GY+SI  +RN+ G L   +K P  R+W    ++   +V+     G  C + G  + KT
Sbjct: 21  GYLSIPPARNYCGAL--KDKGPCVRNWTPNELNCGGFVYQWREAGGKCGVCGDPYGKT 76


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 215
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 102 FYEKRMGAEVEADQLGDEWKGYVL-RVAGGNDKQG 203
           FY K++   ++   L +EW+ +V   +A G DK G
Sbjct: 10  FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,765
Number of Sequences: 59808
Number of extensions: 334067
Number of successful extensions: 957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)