Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31015.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 159 1e-39
Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 2.5
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 28 4.3
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 27 7.6
Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical pr... 27 10.0
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 159 bits (385), Expect = 1e-39
Identities = 82/150 (54%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRA-THVTXRAAMERENVNQFVDVLXTPISRSWALVIVRKGAX 380
FPMKQG+LTN RVRLL+++ + R ER+ + ++ +S + +LVIV+KG
Sbjct: 61 FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMS-ALSLVIVKKGDG 119
Query: 381 EIPGLTDGNVPRRLGPKRVPKSVSCSTLAK 470
EI GLTD +PR+LGPKR K L K
Sbjct: 120 EIEGLTDSVLPRKLGPKRASKIRKLFNLTK 149
Score = 77.4 bits (182), Expect = 5e-15
Identities = 40/80 (50%), Positives = 49/80 (61%)
Frame = +2
Query: 257 KGHSCYRXRRDGERKRKSVRGCIXDANLSVLGSCYCAQGCPXNSWID*WKCTPPSRSQTC 436
KG SCYR R++GERKRKSVRGCI DAN+S L +G + +
Sbjct: 79 KGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRA 138
Query: 437 SKIRKLFNLSKXDDVRRYVV 496
SKIRKLFNL+K DDV +YV+
Sbjct: 139 SKIRKLFNLTKHDDVTKYVI 158
>Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical
protein F46C5.7 protein.
Length = 199
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = -3
Query: 323 YIHELIYVFSLHRGAXCNMSGPLHQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA* 144
++ L+Y+ + G+ N LH T +A + L+ + ++ YIA ++A
Sbjct: 68 FVFVLLYL-EFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAH 126
Query: 143 LISLYFGAHALF 108
+I Y+G +F
Sbjct: 127 VIYKYYGCQVIF 138
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 42 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 200
Y G ++FE+ E K RIF EK + + ++ ++ L++ G NDK+
Sbjct: 6 YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 57 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 200
C K F+ + ++ E+++ E E Q D W G LR G DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 174 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 37
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 174 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 37
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 174 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 37
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436
>Z47809-1|CAA87779.1| 370|Caenorhabditis elegans Hypothetical
protein F42A8.1 protein.
Length = 370
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 218 GRPDKQPCSSSDAKGHSCYRXRRDGERKRKSVRGCI 325
GR ++ + +DAK YR R DG + ++ GCI
Sbjct: 114 GRTYQKGETWTDAKNTYYYRCRDDGRVVKTTIEGCI 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,435,982
Number of Sequences: 27780
Number of extensions: 226479
Number of successful extensions: 600
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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