Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31015.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   1.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   1.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.4  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 404 KCTPPSRSQTCSKIRKLFNLSK 469
           KC P S S  C+KI   +NL+K
Sbjct: 113 KCLPTSGSDNCNKI---YNLAK 131


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 404 KCTPPSRSQTCSKIRKLFNLSK 469
           KC P S S  C+KI   +NL+K
Sbjct: 113 KCLPTSGSDNCNKI---YNLAK 131


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 114 RMGAEVEADQLGDEWKGYV 170
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 73  SNNFWHPVAGYETFN 29
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 11  IDRSHEVKRFVPGNGMP 61
           I+ +HE  +++PG+ +P
Sbjct: 55  INETHENVKYLPGHKLP 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,156
Number of Sequences: 438
Number of extensions: 2501
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)