Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31015.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   139   1e-33
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             138   1e-33
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.00 
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   2.3  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    27   5.3  
At4g31240.2 68417.m04435 expressed protein                             27   7.0  
At4g31240.1 68417.m04434 expressed protein                             27   7.0  
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    27   7.0  
At5g54560.1 68418.m06792 hypothetical protein contains Pfam prof...    27   9.3  
At5g15110.1 68418.m01770 pectate lyase family protein similar to...    27   9.3  
At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin ...    27   9.3  
At1g21390.1 68414.m02676 expressed protein                             27   9.3  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  139 bits (336), Expect = 1e-33
 Identities = 73/145 (50%), Positives = 90/145 (62%), Gaps = 5/145 (3%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT-----HVTXRAAMERENVNQFVDVLXTPISRSWALVIVR 368
           FPMKQGVLT  RVRLL+ R T     H        R++V      + +P      LVIV+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVR---GCIVSPDLSVLNLVIVK 117

Query: 369 KGAXEIPGLTDGNVPRRLGPKRVPK 443
           KG  ++PGLTD   PR  GPKR  K
Sbjct: 118 KGENDLPGLTDTEKPRMRGPKRASK 142



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 40/84 (47%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
 Frame = +2

Query: 257 KGHSCYRX--RRDGERKRKSVRGCIXDANLSVLGSCYCAQG---CPXNSWID*WKCTPPS 421
           +G  C+R   RR GER+RKSVRGCI   +LSVL      +G    P  +  +  +   P 
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPK 138

Query: 422 RSQTCSKIRKLFNLSKXDDVRRYV 493
           R+   SKIRKLFNL K DDVR YV
Sbjct: 139 RA---SKIRKLFNLKKEDDVRTYV 159


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  138 bits (335), Expect = 1e-33
 Identities = 74/154 (48%), Positives = 92/154 (59%), Gaps = 5/154 (3%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT-----HVTXRAAMERENVNQFVDVLXTPISRSWALVIVR 368
           FPMKQGVLT  RVRLL+ R T     H        R++V      + +P      LVIV+
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVR---GCIVSPDLSVLNLVIVK 117

Query: 369 KGAXEIPGLTDGNVPRRLGPKRVPKSVSCSTLAK 470
           KG  ++PGLTD   PR  GPKR  K      L K
Sbjct: 118 KGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGK 151



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
 Frame = +2

Query: 257 KGHSCYRX--RRDGERKRKSVRGCIXDANLSVLGSCYCAQGCPXNSWID*WKCTPPSRSQ 430
           +G  C+R   RR GER+RKSVRGCI   +LSVL      +G      +   +       +
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPK 138

Query: 431 TCSKIRKLFNLSKXDDVRRYV 493
             SKIRKLFNL K DDVR+YV
Sbjct: 139 RASKIRKLFNLGKEDDVRKYV 159


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 45  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 212
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 272 YRXRRDGERKRKSVRGCIXDANLSVLGSCYCAQ 370
           Y   RD  +KR   RG   D +L+   SCY A+
Sbjct: 764 YSGARDQIKKRLKERGTFEDDSLTFHASCYAAK 796


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 218 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 117
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 218 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 117
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 463 KVEQLTDFGTRLGPRRRGTFPSVNPGISWAPL 368
           K++    FG R+  R+  +  SVNPG ++APL
Sbjct: 386 KMQLQVQFGNRVEARKSSSSASVNPG-TYAPL 416


>At5g54560.1 68418.m06792 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 360

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 219 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 82
           P S G L      R E H+P I RL  + L   P A R+  ++C R
Sbjct: 202 PGSGGHLIGSWDPRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 247


>At5g15110.1 68418.m01770 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 472

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 230 KQPCSSSDAKGHSCYRXRRDGERKRKSVRGCI 325
           K PC++S+     C+R R D  ++RK +  C+
Sbjct: 115 KGPCTASNPID-KCWRCRSDWAKRRKKLTRCV 145


>At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin
           family protein similar to S glycoprotein [Brassica rapa]
           GI:2351186; contains Pfam profile PF01453: Lectin
           (probable mannose binding)
          Length = 455

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
 Frame = +2

Query: 359 YCAQG----CPXNSWID*W--KCTPPSRSQTCSKIR-KLFNLSKXDDVRRY 490
           YC +G    CP    +  W  KC PP  +Q CS ++ K  N  K   V  +
Sbjct: 343 YCDRGMCNACPTPKGLLGWSDKCAPPKTTQFCSGVKGKTVNYYKIVGVEHF 393


>At1g21390.1 68414.m02676 expressed protein
          Length = 248

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 161 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRXRRD 289
           G+C+   WR    + P    RP+     S D+K  +  R +R+
Sbjct: 28  GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRE 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,884,940
Number of Sequences: 28952
Number of extensions: 213553
Number of successful extensions: 585
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)