Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31014.Seq
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    77   8e-16
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    51   6e-08
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   1.1  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    26   1.5  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   1.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   5.9  
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      24   7.8  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    24   7.8  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 77.0 bits (181), Expect = 8e-16
 Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 174
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 175 AELNYAMDVYELNXRVNSSESIXGLWA 255
            E+ Y   +Y L+ + N  E + G +A
Sbjct: 81  VEMEYHRAMYHLHLKANPREVVVGWYA 107


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 50.8 bits (116), Expect = 6e-08
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 177
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 178 -ELNYAMDVYELNXRVNSSESIXG 246
            + N+   + E+  ++N++E + G
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVG 100


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 49  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 174
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 243 WFVGTXNEVTNHFSVIHEYYPVNAVSL 323
           W       V+NH SV+H   P++ +SL
Sbjct: 147 WLFENTRTVSNHNSVLHGIKPIDFISL 173


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 203
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 42  GRIRTSKCRFSQSYRHLIGHERQRS 116
           G+    KCR ++   HL+GHE + S
Sbjct: 281 GQYHKYKCRPAEYVCHLLGHEGEGS 305


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 79  LCENLHFDVRMRPQFEIKQQDGP 11
           +CE LH++ R + Q +I + D P
Sbjct: 59  VCEYLHYNYRYKNQLDIPKFDIP 81


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 192 RVIKFRFDLIGMFFVWHAEAVGYFHHSFV 106
           R I + F +  +++ +      YFHH F+
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFI 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,140
Number of Sequences: 5004
Number of extensions: 26070
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)