Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31014.Seq
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 69 1e-12
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 58 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 38 0.002
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 2.3
11_01_0433 - 3323372-3324616,3324708-3324905 27 3.1
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887... 27 4.0
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 4.0
03_06_0180 + 32175658-32178145,32178765-32178808 27 5.3
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 26 7.1
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116 26 7.1
06_03_0630 + 22926652-22928133 26 7.1
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 26 7.1
02_05_0113 - 25941189-25941519,25941630-25941925,25942238-259429... 26 9.3
01_06_1392 + 36995579-36996028,36997145-36997375 26 9.3
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 68.9 bits (161), Expect = 1e-12
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 180
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 181 LNYAMDVYELNXRVNSSESIXG 246
+ Y ++Y + +VN E I G
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVG 99
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 57.6 bits (133), Expect = 3e-09
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 175 AELNYAMDVYELNXRVNS 228
+ NY ++ + R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNXRVNSSESIXG 246
V G LLG V+EVTNCF P +E ++ +A+ NY +++ VN + G
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVG 113
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 98 ARATKEWWK*PTASACHTKN-MPIKSK 175
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D+ V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>07_03_0737 +
21087442-21088282,21088402-21088524,21088623-21088744,
21088784-21089027,21089430-21089670,21089746-21089899,
21090179-21090214,21090215-21090520
Length = 688
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 141 RATQRTCRSSRSGT*LRDGCLRAEQXSQFL*KYXWFVGTXNEVTNHFS 284
R +R C SS+ T +DGC+ +FL FVG + V+ +S
Sbjct: 97 RVARRDCPSSKDATTYQDGCIVRFSDQRFL----DFVGVNSPVSELYS 140
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D+ V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>03_06_0180 + 32175658-32178145,32178765-32178808
Length = 843
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 11 RSILLFYFKLWTHTNVEM 64
RS LLFY K+W H + +
Sbjct: 126 RSALLFYLKMWAHPSAPL 143
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVW 145
D+ V L+ IH+ I F F ++FVW
Sbjct: 327 DAAVVLMLIHQFITFGFACTPLYFVW 352
>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
Length = 886
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 130 WLLPPLLCRSCPIRCR 83
WLLP L R CP RCR
Sbjct: 203 WLLPSFLRRGCP-RCR 217
>06_03_0630 + 22926652-22928133
Length = 493
Score = 26.2 bits (55), Expect = 7.1
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 70 SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNXRVNSSESIXGL 249
+HR++ L + V+ T VPH + D +A D Y R +ES+ +
Sbjct: 51 AHRLMFPSLPSPAGEDVDDTGVAYVPHSDGYDDGYKPGVHARDDYMARTRAAGTESLSAI 110
Query: 250 WA--LAMK*PTTSLLYTSII 303
A A P T ++YT ++
Sbjct: 111 VAALAARGRPVTCIVYTFLV 130
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVW 145
D+ V L+ IH+ I F F ++FVW
Sbjct: 337 DAAVVLMLIHQFITFGFACTPLYFVW 362
>02_05_0113 -
25941189-25941519,25941630-25941925,25942238-25942942,
25943030-25943131,25943352-25943679,25944170-25944294,
25944388-25944453,25945046-25945109,25945739-25945821,
25945917-25945943
Length = 708
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 42 GRIRTSKCRFSQSYRHLIGHERQRS--GGSNQLLLRATQRTCRSSRSGT*LRDGC 200
GR+ S S R +G ++ + +N + L ++R ++ +GT L++GC
Sbjct: 51 GRLVNSAKTVESSAREFLGKDKSTTLVASANFVDLAGSERASQALSAGTRLKEGC 105
>01_06_1392 + 36995579-36996028,36997145-36997375
Length = 226
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVW 145
D+ V L+ IH+ I F F ++FVW
Sbjct: 54 DAAVILMLIHQFITFGFACTPLYFVW 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,904
Number of Sequences: 37544
Number of extensions: 174932
Number of successful extensions: 441
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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