Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31014.Seq
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   2e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   6e-04
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)                   30   0.59 
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)             28   2.4  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)                      26   9.7  
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)                 26   9.7  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE 174
           +V VHP+VL  +VD + R        RV+G LLG+  KGV++V NCF VP  E   DQ  
Sbjct: 10  TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNV 69

Query: 175 --AELNYAMDVYELNXRVN 225
              + +Y  ++Y +  +VN
Sbjct: 70  WFLDHDYLENMYAMFKKVN 88


>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAEL 183
           V+V  + + +I+   E   +    V G LLG      +E+TNCF  P +K   D+ + ++
Sbjct: 18  VQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDV 77

Query: 184 NYAMDVYELNXRVN 225
           NY M+V      VN
Sbjct: 78  NYQMEVMRRLRAVN 91


>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
          Length = 219

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -1

Query: 238 YFQRN*LXCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 59
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR  P R   L   ++F
Sbjct: 36  YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92

Query: 58  DVRMRPQFEIK 26
               R  F+ K
Sbjct: 93  GRLRRRYFDSK 103


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -1

Query: 238 YFQRN*LXCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 59
           Y+    + CS  + PSR  +P R  R +   +R+  W++   +CR+ P R   L   ++F
Sbjct: 90  YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146

Query: 58  D-VRMRP 41
             +R RP
Sbjct: 147 GRLRRRP 153


>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
          Length = 419

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRF 71
           C G + CFI    R R  KCRF
Sbjct: 78  CRGSNDCFIDKVHRNRCQKCRF 99


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 30   ISNCGRIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTCRSS 170
            I   G + T  C    SY H++G+E  R+G   Q      QR  R++
Sbjct: 1844 IHKVGVMATRFCVLGNSY-HVVGNEASRAGSKRQRDSNDRQRAHRAA 1889


>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
          Length = 89

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   SVKVHPVVLFQIVDAYERRNADSHRVIG 87
           S+ V  V LFQ VD YE++N  + R  G
Sbjct: 30  SLGVSKVDLFQTVDLYEKQNMAAARAKG 57


>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 979

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 115 VVEVTNCFCVPHKEHADQVEAELNYAMDVYELN 213
           ++ + +C  + HKEHAD+ E++   A+ ++ LN
Sbjct: 706 IIALNSCRVMLHKEHADE-ESDYINAVFLHRLN 737


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,364
Number of Sequences: 59808
Number of extensions: 201004
Number of successful extensions: 825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)