Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31014.Seq
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    74   2e-14
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    65   1e-11
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    64   2e-11
At1g10840.1 68414.m01246 eukaryotic translation initiation facto...    39   8e-04
At5g01240.2 68418.m00032 amino acid permease, putative strong si...    29   0.64 
At5g01240.1 68418.m00031 amino acid permease, putative strong si...    29   0.64 
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c...    27   4.5  
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    26   6.0  
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id...    26   7.9  

>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 177
           ++ ++HP+V+F + D + RR   + RVIGTLLG+    G V++ N + VPH E +DQV  
Sbjct: 26  LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85

Query: 178 ELNYAMDVYELNXRVNSSESIXGLWA 255
           +++Y  ++   + +VNS E+I G ++
Sbjct: 86  DIDYHHNMLASHLKVNSKETIVGWYS 111


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
           V VHP+VL  IVD Y R   DS  RV+G LLG+S +GVV+VTN + VP +E         
Sbjct: 17  VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76

Query: 175 AELNYAMDVYELNXRVNSSESIXGLWALAMK 267
            + NY   ++ +  R+N+ E + G ++   K
Sbjct: 77  LDHNYHESMFHMFKRINAKEHVVGWYSTGPK 107


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
           V VHP+VL  IVD Y R   D S RV+G LLG+S +G V+VTN + VP +E         
Sbjct: 17  VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76

Query: 175 AELNYAMDVYELNXRVNSSESIXGLWALAMK 267
            + NY   ++ +  R+N+ E I G ++   K
Sbjct: 77  LDHNYHESMFHMFKRINAKEHIVGWYSTGPK 107


>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 79  VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNXRVNSSESIXG 246
           V G LLG     V+EVTNCF  P ++  +++EA+  NY +++      VN   +  G
Sbjct: 47  VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVG 103


>At5g01240.2 68418.m00032 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 408

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
           D+ V L+ IH+ I F F    ++FVW  +A+G  H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271


>At5g01240.1 68418.m00031 amino acid permease, putative strong
           similarity to AUX1 GI:1531758 from [Arabidopsis
           thaliana]; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 488

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 118
           D+ V L+ IH+ I F F    ++FVW  +A+G  H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351


>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
           contains Pfam profile: PF04873 ethylene insensitive 3
          Length = 557

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 80  LSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRW 196
           L+ P+W   T+ WW    A+A      P +   +L   W
Sbjct: 215 LAPPWWPNGTELWWGEQGAAAFEHGPPPYRKPHDLRKAW 253


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 142 RRSSWLLPPLLCRSCP 95
           +R+ W + PLL RSCP
Sbjct: 299 KRNGWQVMPLLIRSCP 314


>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
           identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
          Length = 485

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 222 DSXVQLVNIHRVIKFRFDLIGMFFVW 145
           D+ V L+ IH+ I F F    ++FVW
Sbjct: 312 DAAVILMLIHQFITFGFACTPLYFVW 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,669,750
Number of Sequences: 28952
Number of extensions: 137499
Number of successful extensions: 373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)