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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31004.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   159   2e-40
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   152   4e-38
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...   139   3e-34
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   134   7e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...   104   1e-23
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    52   8e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    42   7e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    30   0.29 
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    29   0.68 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.8  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   4.8  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   6.3  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    25   8.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.4  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    25   8.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.4  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    25   8.4  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   8.4  

>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  159 bits (387), Expect = 2e-40
 Identities = 78/117 (66%), Positives = 91/117 (77%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
           P +TIFDAKRLIGRKF+D  VQ+DMKHWPF+V+S  GKP ++V YKGE KTF PEE+SSM
Sbjct: 61  PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120

Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
           VL KM+ETAEAYLG  V +AV+TVPAY    + +  K      GLNVLRIINEPTAA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAA 177



 Score =  112 bits (270), Expect = 3e-26
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = +3

Query: 78  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 254
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPH 62


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  152 bits (368), Expect = 4e-38
 Identities = 74/117 (63%), Positives = 89/117 (76%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
           P +TIFDAKRLIGR+F D  VQ+DMKHWPF+V+   GKP I+V +KGE KTF PEE+SSM
Sbjct: 61  PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120

Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
           VL KM+E+AEA+LG  V +AV+TVPAY    + +  K      GLNVLRIINEPTAA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAA 177



 Score =  112 bits (270), Expect = 3e-26
 Identities = 51/59 (86%), Positives = 56/59 (94%)
 Frame = +3

Query: 78  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 254
           ++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+
Sbjct: 4   SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPH 62


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score =  139 bits (336), Expect = 3e-34
 Identities = 68/117 (58%), Positives = 84/117 (71%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
           P++T+FDAKRLIGR++ED   Q D+KHWPF+V+ + G P I+V Y GE K F  +E+S+M
Sbjct: 65  PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124

Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
           VLTKMKE +EA L K V+ AVITVPAY    +    K      GLNVLRIINEPTAA
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAA 181



 Score =  100 bits (240), Expect = 1e-22
 Identities = 47/63 (74%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
 Frame = +3

Query: 78  AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
           A+GIDLGTTYSCV V++   VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8   AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67

Query: 255 TQY 263
           T +
Sbjct: 68  TVF 70


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  134 bits (325), Expect = 7e-33
 Identities = 63/117 (53%), Positives = 87/117 (74%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
           P++TIFD KRLIGRKF++ T+  D+K +PF +V+D  +P ++V   G+ K F PEE+S+M
Sbjct: 94  PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153

Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
           +L+KMK+TAEAYLGK V +AV+TVPAY    + +  K      GLNV+RI+NEPTAA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAA 210



 Score = 98.7 bits (235), Expect = 6e-22
 Identities = 45/64 (70%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
 Frame = +3

Query: 81  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-NT 257
           +GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ   NP NT
Sbjct: 38  IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97

Query: 258 QYSM 269
            + +
Sbjct: 98  IFDI 101


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score =  104 bits (249), Expect = 1e-23
 Identities = 51/117 (43%), Positives = 73/117 (62%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
           P++T F  KRLIGR+F++  VQ D+K  P+++V            +   KT+ P ++   
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166

Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
           +L+KM+ETA  YLGK V+NAV+TVPAY    + +  K      GLNVLR++NEPTAA
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAA 223



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
 Frame = +3

Query: 69  KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 245
           K P +GIDLGTT SC+ + +    ++IAN +G RTTPS VAFT D ERL+G +AK Q  +
Sbjct: 49  KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108

Query: 246 NPNTQY 263
           NP   +
Sbjct: 109 NPENTF 114


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 51.6 bits (118), Expect = 8e-08
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
 Frame = +2

Query: 251 QHTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
           ++T+   KRL GR ++D  ++  +      ++    G    KV Y  E+  F   ++ + 
Sbjct: 65  RNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAA 124

Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
             TK+K  AEA L  +V + VI++PA+   ++ +         GLN LR++N+  AA
Sbjct: 125 YFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAA 181



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 21/61 (34%), Positives = 39/61 (63%)
 Frame = +3

Query: 66  AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 245
           ++   VGID G + + + V ++  +++I N+  NR+TPS V++ +  R +G+AAK+  A 
Sbjct: 3   SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62

Query: 246 N 248
           N
Sbjct: 63  N 63


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = +2

Query: 389 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNV 568
           ++K     E S   L ++ E+AE +LG  V   V++VP Y    + K  +      GL V
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPV 193

Query: 569 LRIINEPTA 595
           L++I++P A
Sbjct: 194 LQLIHDPAA 202



 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 81  VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
           +GI  G   S +   + GK +++AN++GNR  PS +++   +   G  A+ Q+  N
Sbjct: 27  IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 81  VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNT 257
           + ID GT ++   + + G  +EI+      R   S VAF   ER+ G  A N     P  
Sbjct: 25  LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82

Query: 258 QYSMPNV 278
            +S+ NV
Sbjct: 83  AHSIRNV 89



 Score = 28.7 bits (61), Expect = 0.68
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = +2

Query: 248 PQHTIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVS 421
           P H+I + K L+     E   VQ     +P   + +  +    +++   +++ +  EE+ 
Sbjct: 82  PAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEII 141

Query: 422 SMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
           +M +      AE    + + + V+TVP +   L+          L  +VL +I++  A
Sbjct: 142 AMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVA 199


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 168
           HP   S W+P    LVS+    W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 177  PSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLC 311
            P  +A T  ER++  AAK   A+N    Y++  ++ D   K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
 Frame = -2

Query: 492 ITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSL 346
           I++  T+L     + S + +S+  + S    +LSS +           Y++ ++    +L
Sbjct: 618 ISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTL 677

Query: 345 TTSKGQCFMSACTVASSNLRPMRRLASNIVCWGSS 241
            +S     +S+  VASS+  P+   +S +  + +S
Sbjct: 678 VSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 431 LTKMKETAEAYLGKTVQNAVITVPAYSMTLK-DKPQKMQVPSLGLNVLRIINEP 589
           LT M + A+   G+ V+   I    Y  +L  D+   ++VPSLG+N L   N P
Sbjct: 600 LTAMVQFAQKTEGE-VKKLFIKAKIYFESLSLDERGNLKVPSLGINGLEYDNWP 652


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 159 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 1
           G W  SP S +  H   ++++  +F +RVL   C+      L  K  +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 222 AAKNQVAMNPNTQYSMPNVSSDVSSKML 305
           A K Q+ +NP   + +PNV  D  + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 388 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 266
           T I  L   + S+TDN+ER  + +G  + I  +TS   F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 427  GAYENEGNCRSLSWQNCAECSYHGSRVLND 516
            GAY N   C  +S  N A CS   S ++ND
Sbjct: 1689 GAYSNA--CVDISLSNLALCSILNSALIND 1716


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -1

Query: 307 SSIFELTSDETFGIEY-CVL 251
           S+++ELT DET  +++ C+L
Sbjct: 51  STVYELTGDETLNLKFTCIL 70


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 59  QNGKSTRSRNRSGYHVLLRWCLPARE 136
           +NGK T +R +S     + W  P++E
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE 502


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 583 IDDSENVQAQRWYLHLLWLVFESH*VRGNRDNCILHSFAKISFGSFLHF 437
           I D + +Q    +  + +++FE H    NR++CI H      F + LHF
Sbjct: 226 IRDIQGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQV---FRNTLHF 271


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 246 NPNTQYSMPNVSSDVSSKMLLCKPT*STGLS 338
           N NTQ+S+PN S  V     L +P    G +
Sbjct: 327 NLNTQFSLPNNSQPVFGHTSLTQPVNPNGFT 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,696
Number of Sequences: 5004
Number of extensions: 57667
Number of successful extensions: 217
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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