Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31004.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16030.1 68414.m01924 heat shock protein 70, putative / HSP70... 155 3e-38
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 143 7e-35
At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein, puta... 143 9e-35
At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1 (HS... 141 4e-34
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 140 5e-34
At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2 (HS... 140 9e-34
At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)... 139 1e-33
At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)... 139 1e-33
At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)... 139 1e-33
At3g09440.1 68416.m01121 heat shock cognate 70 kDa protein 3 (HS... 138 2e-33
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p... 104 5e-23
At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)... 100 1e-21
At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70... 78 5e-15
At1g79930.1 68414.m09340 heat shock protein, putative contains P... 77 7e-15
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 76 2e-14
At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70... 75 5e-14
At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70... 75 5e-14
At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)... 74 6e-14
At2g32120.2 68415.m03926 heat shock protein 70 family protein / ... 61 6e-10
At2g32120.1 68415.m03925 heat shock protein 70 family protein / ... 61 6e-10
At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70... 42 3e-04
At4g34940.1 68417.m04953 armadillo/beta-catenin repeat family pr... 30 1.3
At4g24910.1 68417.m03566 hypothetical protein contains Pfam prof... 29 1.8
At5g62550.1 68418.m07850 expressed protein 29 2.4
At4g27630.2 68417.m03972 expressed protein 28 4.1
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 28 4.1
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 28 4.1
At3g25740.1 68416.m03205 metallopeptidase M24 family protein sim... 27 7.2
At1g44414.1 68414.m05112 hypothetical protein 27 7.2
At1g28630.1 68414.m03526 expressed protein ; expression supporte... 27 7.2
At3g49130.1 68416.m05368 hypothetical protein 27 9.5
At3g25790.1 68416.m03210 myb family transcription factor contain... 27 9.5
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 27 9.5
>At1g16030.1 68414.m01924 heat shock protein 70, putative / HSP70,
putative similar to heat shock protein hsp70 GI:1771478
from [Pisum sativum]
Length = 646
Score = 155 bits (375), Expect = 3e-38
Identities = 77/118 (65%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGG-KPKIKVAYKGEDKTFFPEEVSS 424
PQ+T+FDAKRLIGRKF D +VQ+D+ HWPF+VVS G KP I V+YK E+K F PEE+SS
Sbjct: 65 PQNTVFDAKRLIGRKFSDPSVQSDILHWPFKVVSGPGEKPMIVVSYKNEEKQFSPEEISS 124
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
MVL KMKE AEA+LG+TV+NAV+TVPAY + + K GLNVLRIINEPTAA
Sbjct: 125 MVLVKMKEVAEAFLGRTVKNAVVTVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAA 182
Score = 111 bits (266), Expect = 5e-25
Identities = 52/63 (82%), Positives = 58/63 (92%), Gaps = 1/63 (1%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-N 254
A+GIDLGTTYSCVGV+ + +VEII NDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NP N
Sbjct: 8 AIGIDLGTTYSCVGVWMNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQN 67
Query: 255 TQY 263
T +
Sbjct: 68 TVF 70
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 143 bits (347), Expect = 7e-35
Identities = 70/117 (59%), Positives = 88/117 (75%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P+ TIFD KRLIGRKF+D VQ D+K P++VV+ GKP I+V KGE+K F PEE+S+M
Sbjct: 109 PERTIFDPKRLIGRKFDDPDVQRDIKFLPYKVVNKDGKPYIQVKVKGEEKLFSPEEISAM 168
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
+LTKMKETAEA+LGK +++AVITVPAY + + K GLNV+RIINEPT A
Sbjct: 169 ILTKMKETAEAFLGKKIKDAVITVPAYFNDAQRQATKDAGAIAGLNVVRIINEPTGA 225
Score = 101 bits (242), Expect = 4e-22
Identities = 46/57 (80%), Positives = 51/57 (89%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 251
+GIDLGTTYSCVGV+ + VEIIANDQGNR TPS+VAFTDTERLIG+AAKNQ A NP
Sbjct: 53 IGIDLGTTYSCVGVYHNKHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAKNP 109
>At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein,
putative / HSC70, putative / HSP70, putative strong
similarity to heat shock cognate 70 kd protein 1
SP:P22953 [Arabidopsis thaliana (Mouse-ear cress)]
Length = 617
Score = 143 bits (346), Expect = 9e-35
Identities = 72/118 (61%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVAYKGEDKTFFPEEVSS 424
P +T+FDAKRLIGR+F DA+VQ+DMK WPF+V KP I V YKGE+K F EE+SS
Sbjct: 66 PVNTVFDAKRLIGRRFSDASVQSDMKFWPFKVTPGQADKPMIFVNYKGEEKQFAAEEISS 125
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
MVL KM+E AEAYLG +++NAV+TVPAY + + K GLNVLRIINEPTAA
Sbjct: 126 MVLIKMREIAEAYLGSSIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAA 183
Score = 120 bits (290), Expect = 6e-28
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+ PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMN
Sbjct: 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMN 65
Query: 249 P-NTQY 263
P NT +
Sbjct: 66 PVNTVF 71
>At5g02500.1 68418.m00183 heat shock cognate 70 kDa protein 1
(HSC70-1) (HSP70-1) identical to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}
Length = 651
Score = 141 bits (341), Expect = 4e-34
Identities = 70/118 (59%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEV-VSDGGKPKIKVAYKGEDKTFFPEEVSS 424
P +T+FDAKRLIGR+F D++VQ+DMK WPF++ KP I V YKGE+K F EE+SS
Sbjct: 66 PVNTVFDAKRLIGRRFSDSSVQSDMKLWPFKIQAGPADKPMIYVEYKGEEKEFAAEEISS 125
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
MVL KM+E AEAYLG T++NAV+TVPAY + + K GLNV+RIINEPTAA
Sbjct: 126 MVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA 183
Score = 120 bits (290), Expect = 6e-28
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+ PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMN
Sbjct: 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMN 65
Query: 249 P-NTQY 263
P NT +
Sbjct: 66 PVNTVF 71
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 140 bits (340), Expect = 5e-34
Identities = 71/118 (60%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGG-KPKIKVAYKGEDKTFFPEEVSS 424
P +T+FDAKRLIGR++ D +VQAD HWPF+VVS G KP I V +KGE+K F EE+SS
Sbjct: 66 PTNTVFDAKRLIGRRYSDPSVQADKSHWPFKVVSGPGEKPMIVVNHKGEEKQFSAEEISS 125
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
MVL KM+E AEA+LG V+NAV+TVPAY + + K GLNV+RIINEPTAA
Sbjct: 126 MVLIKMREIAEAFLGSPVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAA 183
Score = 120 bits (290), Expect = 6e-28
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+ PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMN
Sbjct: 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMN 65
Query: 249 P-NTQY 263
P NT +
Sbjct: 66 PTNTVF 71
>At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2
(HSC70-2) (HSP70-2) identical to SP|P22954 Heat shock
cognate 70 kDa protein 2 (Hsc70.2) {Arabidopsis
thaliana}
Length = 653
Score = 140 bits (338), Expect = 9e-34
Identities = 71/118 (60%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGG-KPKIKVAYKGEDKTFFPEEVSS 424
P +T+FDAKRLIGR+F DA+VQ+D + WPF ++S KP I V YKGE+K F EE+SS
Sbjct: 66 PVNTVFDAKRLIGRRFSDASVQSDRQLWPFTIISGTAEKPMIVVEYKGEEKQFAAEEISS 125
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
MVL KM+E AEA+LG TV+NAV+TVPAY + + K GLNVLRIINEPTAA
Sbjct: 126 MVLIKMREIAEAFLGTTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAA 183
Score = 120 bits (290), Expect = 6e-28
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+ PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMN
Sbjct: 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMN 65
Query: 249 P-NTQY 263
P NT +
Sbjct: 66 PVNTVF 71
>At5g42020.2 68418.m05116 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 613
Score = 139 bits (336), Expect = 1e-33
Identities = 70/118 (59%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSS 424
P+ T+FD KRLIGRKFED VQ D K P+++V+ GKP I+V K GE K F PEE+S+
Sbjct: 94 PERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISA 153
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
M+LTKMKETAEAYLGK +++AV+TVPAY + + K GLNV RIINEPTAA
Sbjct: 154 MILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAA 211
Score = 102 bits (245), Expect = 2e-22
Identities = 45/57 (78%), Positives = 53/57 (92%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 251
+GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+V FTD+ERLIG+AAKNQ A+NP
Sbjct: 38 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNP 94
>At5g42020.1 68418.m05115 luminal binding protein 2 (BiP-2) (BP2)
similar to SWISS-PROT: Q39043; GI:1303695; luminal
binding protein (BiP) [Arabidopsis thaliana]
Length = 668
Score = 139 bits (336), Expect = 1e-33
Identities = 70/118 (59%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSS 424
P+ T+FD KRLIGRKFED VQ D K P+++V+ GKP I+V K GE K F PEE+S+
Sbjct: 94 PERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISA 153
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
M+LTKMKETAEAYLGK +++AV+TVPAY + + K GLNV RIINEPTAA
Sbjct: 154 MILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAA 211
Score = 102 bits (245), Expect = 2e-22
Identities = 45/57 (78%), Positives = 53/57 (92%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 251
+GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+V FTD+ERLIG+AAKNQ A+NP
Sbjct: 38 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNP 94
>At5g28540.1 68418.m03480 luminal binding protein 1 (BiP-1) (BP1)
SWISS-PROT:Q9LKR3 PMID:8888624
Length = 669
Score = 139 bits (336), Expect = 1e-33
Identities = 70/118 (59%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSS 424
P+ T+FD KRLIGRKFED VQ D K P+++V+ GKP I+V K GE K F PEE+S+
Sbjct: 94 PERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISA 153
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
M+LTKMKETAEAYLGK +++AV+TVPAY + + K GLNV RIINEPTAA
Sbjct: 154 MILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAA 211
Score = 102 bits (245), Expect = 2e-22
Identities = 45/57 (78%), Positives = 53/57 (92%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 251
+GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+V FTD+ERLIG+AAKNQ A+NP
Sbjct: 38 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNP 94
>At3g09440.1 68416.m01121 heat shock cognate 70 kDa protein 3
(HSC70-3) (HSP70-3) identical to SP|O65719 Heat shock
cognate 70 kDa protein 3 (Hsc70.3) {Arabidopsis
thaliana}
Length = 649
Score = 138 bits (335), Expect = 2e-33
Identities = 70/118 (59%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGG-KPKIKVAYKGEDKTFFPEEVSS 424
P +T+FDAKRLIGR+F D++VQ+D+K WPF + S KP I V YKGEDK F EE+SS
Sbjct: 66 PINTVFDAKRLIGRRFTDSSVQSDIKLWPFTLKSGPAEKPMIVVNYKGEDKEFSAEEISS 125
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
M+L KM+E AEAYLG T++NAV+TVPAY + + K GLNV+RIINEPTAA
Sbjct: 126 MILIKMREIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA 183
Score = 120 bits (290), Expect = 6e-28
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Frame = +3
Query: 69 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 248
+ PA+GIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTD+ERLIGDAAKNQVAMN
Sbjct: 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMN 65
Query: 249 P-NTQY 263
P NT +
Sbjct: 66 PINTVF 71
>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
putative / HSP70, mitochondrial, putative strong
similarity to SP|Q01899 Heat shock 70 kDa protein,
mitochondrial precursor {Phaseolus vulgaris}
Length = 682
Score = 104 bits (249), Expect = 5e-23
Identities = 55/117 (47%), Positives = 74/117 (63%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P +TIF +KRLIGR+F+D Q +MK P+++V P + + F P ++ +
Sbjct: 112 PTNTIFGSKRLIGRRFDDPQTQKEMKMVPYKIVK---APNGDAWVEANGQKFSPSQIGAN 168
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
VLTKMKETAEAYLGK++ AV+TVPAY + + K GL+V RIINEPTAA
Sbjct: 169 VLTKMKETAEAYLGKSINKAVVTVPAYFNDAQRQATKDAGKIAGLDVQRIINEPTAA 225
Score = 58.4 bits (135), Expect = 3e-09
Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNP 251
+GIDLGTT SCV V + +I N +G+RTTPS VA E L+G AK Q NP
Sbjct: 55 IGIDLGTTNSCVSVMEGKTARVIENAEGSRTTPSVVAMNQKGELLVGTPAKRQAVTNP 112
>At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)
identical to heat shock protein 70 [Arabidopsis
thaliana] GI:6746590
Length = 682
Score = 99.5 bits (237), Expect = 1e-21
Identities = 53/117 (45%), Positives = 72/117 (61%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P +T+ KRLIGRKF+D Q +MK P+++V P + + + P ++ +
Sbjct: 117 PTNTVSGTKRLIGRKFDDPQTQKEMKMVPYKIVR---APNGDAWVEANGQQYSPSQIGAF 173
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
+LTKMKETAEAYLGK+V AV+TVPAY + + K GL+V RIINEPTAA
Sbjct: 174 ILTKMKETAEAYLGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAA 230
Score = 62.5 bits (145), Expect = 2e-10
Identities = 34/70 (48%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 60 KMAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQ 236
K A +GIDLGTT SCV V + ++I N +G RTTPS VAF T E L+G AK Q
Sbjct: 53 KPAGNDVIGIDLGTTNSCVAVMEGKNPKVIENAEGARTTPSVVAFNTKGELLVGTPAKRQ 112
Query: 237 VAMNPNTQYS 266
NP S
Sbjct: 113 AVTNPTNTVS 122
>At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein 70
[Arabidopsis thaliana] GI:6746592; similar to heat shock
70 protein - Spinacia oleracea,PID:g2654208
Length = 718
Score = 77.8 bits (183), Expect = 5e-15
Identities = 48/117 (41%), Positives = 62/117 (52%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P++T F KR IGRK + V + K + VV D +K+ +K F EE+S+
Sbjct: 138 PENTFFSVKRFIGRKMNE--VDEESKQVSYRVVRDENN-NVKLECPAINKQFAAEEISAQ 194
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
VL K+ + A +L V AVITVPAY + K GL VLRIINEPTAA
Sbjct: 195 VLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 251
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 KMAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQ 236
++ VGIDLGTT S V + GK I+ N +G RTTPS VA+T + +RL+G AK Q
Sbjct: 74 RVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKSGDRLVGQIAKRQ 133
Query: 237 VAMNP-NTQYSM 269
+NP NT +S+
Sbjct: 134 AVVNPENTFFSV 145
>At1g79930.1 68414.m09340 heat shock protein, putative contains Pfam
profile: PF00012 Heat shock hsp70 proteins; similar to
heat-shock proteins GB:CAA94389, GB:AAD55461
[Arabidopsis thaliana]
Length = 831
Score = 77.4 bits (182), Expect = 7e-15
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVAYKGEDKTFFPEEVSS 424
P+++I KRLIGR+F D +Q D+K PF V G P I Y GE + F P +V
Sbjct: 60 PKNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEKRAFTPTQVMG 119
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
M+L+ +K AE L V + I +P Y L+ + GL+ LR+I+E TA
Sbjct: 120 MMLSNLKGIAEKNLNTAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLRLIHETTA 176
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNTQ 260
VG D G V V + ++++ ND+ NR TP+ V F D +R IG A MNP
Sbjct: 4 VGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNPKNS 63
Query: 261 YS 266
S
Sbjct: 64 IS 65
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 76.2 bits (179), Expect = 2e-14
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSS 424
P+ TI KRLIGRKF + VQ D++ +PFE D G +I++ Y GE ++F P ++
Sbjct: 60 PKSTISQLKRLIGRKFREPDVQNDLRLFPFETSEDSDGGIQIRLRYMGEIQSFSPVQILG 119
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
M+L+ +K+ AE L V + VI +P+Y + GL LR++++ TA
Sbjct: 120 MLLSHLKQIAEKSLKTPVSDCVIGIPSYFTNSQRLAYLDAAAIAGLRPLRLMHDSTA 176
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNTQ 260
VG D+G + V + ++++ ND+ NR P+ V+F + +R +G AA M+P +
Sbjct: 4 VGFDVGNENCVIAVAKQRGIDVLLNDESNRENPAMVSFGEKQRFMGAAAAASATMHPKST 63
Query: 261 YS 266
S
Sbjct: 64 IS 65
>At1g79920.2 68414.m09339 heat shock protein 70, putative / HSP70,
putative contains Pfam profile: PF00012 Heat shock hsp70
proteins; similar to heat-shock proteins GB:CAA94389,
GB:AAD55461 [Arabidopsis thaliana]
Length = 736
Score = 74.5 bits (175), Expect = 5e-14
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVAYKGEDKTFFPEEVSS 424
P+++I KRLIGR+F D +Q D+K PF V G P I Y GE + F P +V
Sbjct: 60 PKNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEIRAFTPTQVMG 119
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
M+L+ +K AE L V + I +P Y L+ + GL+ L +I+E TA
Sbjct: 120 MMLSNLKGIAEKNLNTAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLHLIHETTA 176
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNTQ 260
VG D G V V + ++++ ND+ NR TP+ V F D +R IG A MNP
Sbjct: 4 VGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNPKNS 63
Query: 261 YS 266
S
Sbjct: 64 IS 65
>At1g79920.1 68414.m09338 heat shock protein 70, putative / HSP70,
putative contains Pfam profile: PF00012 Heat shock hsp70
proteins; similar to heat-shock proteins GB:CAA94389,
GB:AAD55461 [Arabidopsis thaliana]
Length = 736
Score = 74.5 bits (175), Expect = 5e-14
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVV-SDGGKPKIKVAYKGEDKTFFPEEVSS 424
P+++I KRLIGR+F D +Q D+K PF V G P I Y GE + F P +V
Sbjct: 60 PKNSISQIKRLIGRQFSDPELQRDIKSLPFSVTEGPDGYPLIHANYLGEIRAFTPTQVMG 119
Query: 425 MVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
M+L+ +K AE L V + I +P Y L+ + GL+ L +I+E TA
Sbjct: 120 MMLSNLKGIAEKNLNTAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLHLIHETTA 176
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +3
Query: 81 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNTQ 260
VG D G V V + ++++ ND+ NR TP+ V F D +R IG A MNP
Sbjct: 4 VGFDFGNENCLVAVARQRGIDVVLNDESNRETPAIVCFGDKQRFIGTAGAASTMMNPKNS 63
Query: 261 YS 266
S
Sbjct: 64 IS 65
>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
identical to heat shock protein 70 [Arabidopsis
thaliana] GI:6746592
Length = 718
Score = 74.1 bits (174), Expect = 6e-14
Identities = 46/117 (39%), Positives = 61/117 (52%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P++T F KR IGR+ + V + K + V+ D +K+ K F EE+S+
Sbjct: 138 PENTFFSVKRFIGRRMNE--VAEESKQVSYRVIKDENG-NVKLDCPAIGKQFAAEEISAQ 194
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
VL K+ + A +L V AVITVPAY + K GL VLRIINEPTAA
Sbjct: 195 VLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 251
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 60 KMAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQ 236
++ VGIDLGTT S V + GK I+ N +G RTTPS VA+T + +RL+G AK Q
Sbjct: 74 RVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKSKDRLVGQIAKRQ 133
Query: 237 VAMNP-NTQYSM 269
+NP NT +S+
Sbjct: 134 AVVNPENTFFSV 145
>At2g32120.2 68415.m03926 heat shock protein 70 family protein /
HSP70 family protein similar to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}; contains InterPro accession IPR001023: Heat
shock protein Hsp70
Length = 563
Score = 60.9 bits (141), Expect = 6e-10
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +2
Query: 260 IFDAKRLIGRKFEDATVQADMKHWPF--EVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 433
IF+ KRL+GR D V A K+ PF + + G +P I ++ PEEV ++ L
Sbjct: 93 IFNMKRLVGRVDTDPVVHAS-KNLPFLVQTLDIGVRPFIAALVNNAWRSTTPEEVLAIFL 151
Query: 434 TKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
+++ AEA L + V+N V+TVP + + GL+VLR++ EPTA
Sbjct: 152 VELRLMAEAQLKRPVRNVVLTVPVSFSRFQLTRFERACAMAGLHVLRLMPEPTA 205
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD 200
A+GID+GT+ + V+ +V I+ N + + S+V F D
Sbjct: 30 ALGIDIGTSQCSIAVWNGSQVHILRNTRNQKLIKSFVTFKD 70
>At2g32120.1 68415.m03925 heat shock protein 70 family protein /
HSP70 family protein similar to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}; contains InterPro accession IPR001023: Heat
shock protein Hsp70
Length = 563
Score = 60.9 bits (141), Expect = 6e-10
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +2
Query: 260 IFDAKRLIGRKFEDATVQADMKHWPF--EVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 433
IF+ KRL+GR D V A K+ PF + + G +P I ++ PEEV ++ L
Sbjct: 93 IFNMKRLVGRVDTDPVVHAS-KNLPFLVQTLDIGVRPFIAALVNNAWRSTTPEEVLAIFL 151
Query: 434 TKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTA 595
+++ AEA L + V+N V+TVP + + GL+VLR++ EPTA
Sbjct: 152 VELRLMAEAQLKRPVRNVVLTVPVSFSRFQLTRFERACAMAGLHVLRLMPEPTA 205
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 78 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD 200
A+GID+GT+ + V+ +V I+ N + + S+V F D
Sbjct: 30 ALGIDIGTSQCSIAVWNGSQVHILRNTRNQKLIKSFVTFKD 70
>At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70,
putative
Length = 867
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/117 (22%), Positives = 52/117 (44%)
Frame = +2
Query: 248 PQHTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 427
P + ++G+ F+ D + PF++V D + + + + EE+ +M
Sbjct: 87 PNKVYSQLRDMVGKPFKHVKDFIDSVYLPFDIVEDS-RGAVGIKIDDGSTVYSVEELLAM 145
Query: 428 VLTKMKETAEAYLGKTVQNAVITVPAYSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 598
+L AE + V++ V++VP Y + + G+NVL ++NE + A
Sbjct: 146 ILGYASNLAEFHAKIPVKDMVVSVPPYFGQAERRGLIQASQLAGVNVLSLVNEHSGA 202
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 66 AKAPAVGIDLGTTYSCVGV--FQHGK--VEIIANDQGNRTTPSYVAFTDTERLIGDAAKN 233
+++ + +DLG+ + V V + G+ + + N+ R +P+ VAF +RL+G+ A
Sbjct: 22 SESAVLSVDLGSEWVKVAVVNLKRGQSPISVAINEMSKRKSPALVAFQSGDRLLGEEAAG 81
Query: 234 QVAMNPNTQYS 266
A PN YS
Sbjct: 82 ITARYPNKVYS 92
>At4g34940.1 68417.m04953 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 664
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 194 HRHRASHRRCRQEPGGDEPQHTIFDAKRLIGRKFEDATVQADMK 325
++ +H + P G+ P H + GR++ED +A MK
Sbjct: 378 NQQHQNHTKGGSNPRGNNPTHVSLMGTSIKGREYEDPATKAQMK 421
>At4g24910.1 68417.m03566 hypothetical protein contains Pfam profile
PF04669: Protein of unknown function (DUF579)
Length = 315
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 186 HKTEWSCCPGRWR*SPPSRAG--RHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQL 19
H++ S R SPPS +HQR ST +F +R L+P IF S L+ L
Sbjct: 6 HQSSLSILNPLLRFSPPSSPDNPKHQRLSTIKMPKFTVRKLIPLLIFVLSSLSVLRLL 63
>At5g62550.1 68418.m07850 expressed protein
Length = 487
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -2
Query: 471 LPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSN 292
+PR A VS + ST L SGKK + L +P T++ +S+ + S
Sbjct: 47 MPRRARVVSAVSQSTTVLDLSGKKSVDRTKLPPRRLSIPNKPTSNSSVKSVSSSVTSLSE 106
Query: 291 LRPMR 277
++P R
Sbjct: 107 VKPKR 111
>At4g27630.2 68417.m03972 expressed protein
Length = 467
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 123 RHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKR 10
R R W D F L VLL F + CYL L+ R
Sbjct: 71 REARMVNWKVDLFCLIVLLVFMLPYYHCYLMLRNTGVR 108
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 165 NRTTPSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLC 311
N+ V F+ + LIG A +N + T+ S+ VS DVS +C
Sbjct: 138 NKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVC 186
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 165 NRTTPSYVAFTDTERLIGDAAKNQVAMNPNTQYSMPNVSSDVSSKMLLC 311
N+ V F+ + LIG A +N + T+ S+ VS DVS +C
Sbjct: 138 NKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVC 186
>At3g25740.1 68416.m03205 metallopeptidase M24 family protein
similar to SP|O33343 Methionine aminopeptidase (EC
3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis};
contains Pfam profile PF00557: metallopeptidase family
M24
Length = 344
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 534 CGLSLRVIEYAGTVITAFCT 475
C L+ RV++YAGT++ F T
Sbjct: 112 CELAARVLDYAGTLVRPFVT 131
>At1g44414.1 68414.m05112 hypothetical protein
Length = 101
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 591 VGSL--MIRRTFKPRDGTCIFCGLSLRVIEYAGTVITAFCTV 472
VG L +R+ K GTCI CG ++EY + F V
Sbjct: 6 VGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPV 47
>At1g28630.1 68414.m03526 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 234 QVAMNPNTQYSMPNVSSDVSSKMLLC 311
Q +NPN YS P+ S+ + LLC
Sbjct: 96 QRLLNPNMMYSEPDFSTSQQQQQLLC 121
>At3g49130.1 68416.m05368 hypothetical protein
Length = 307
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 407 PEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYSMTLKD 526
PE +S M++ ++ +T + + + +T+PA +TLK+
Sbjct: 20 PERLSVMIMNRVAQTQPDMVLQLPLGSQLTIPAKGITLKE 59
>At3g25790.1 68416.m03210 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 357
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 34 QVTRLIKNTKWQKHPQ*ESIWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVS 213
Q T +N++ Q IWVP+T +++ S TT GP+ L S+ P S
Sbjct: 257 QTTPNNRNSQTQHFVVVGGIWVPQTNHSTANAVNAVASGETTGIYGPMVSSLPSEWPRHS 316
Query: 214 S 216
+
Sbjct: 317 N 317
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 144 SPPSRAGR-HQRKSTWYPDRFLLRVLLP 64
S PS R +QRK W+ D F L + LP
Sbjct: 28 SDPSAVRRLNQRKEQWFTDAFTLLISLP 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,046
Number of Sequences: 28952
Number of extensions: 325491
Number of successful extensions: 1037
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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