Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31003.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    88   8e-19
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    59   4e-10
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.7  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   4.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    25   8.4  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 88.2 bits (209), Expect = 8e-19
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 174
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 175 AELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPL----LYTSIIPVNAVSL------ 324
            E+ Y   +Y L+ + N  E +VGW+A +            LY S        L      
Sbjct: 81  VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHP 140

Query: 325 -XHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 483
             H+T++T ++   + ++ YV  P+G+       C F P   T+   E    GL+
Sbjct: 141 CVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 177
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 178 -ELNYAMDVYELNRRVNSSESIVGWW 252
            + N+   + E+ +++N++E +VGW+
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVGWY 102


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 49  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 174
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 551  RQVRARGHAARPATSPDTVFWHTC 480
            +Q+  RG  +  +  PD +FW TC
Sbjct: 950  KQMNRRGATSIVSVRPDPLFWPTC 973


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 203
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 423 HVHSCRCHSHM 455
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 288 IHEYYSRECREPXPCYSGHFAGWRSNGFTCICL 386
           +HEY     ++  PC+     GW SNG  C+ L
Sbjct: 71  LHEY---NLKKMPPCHFYAERGWCSNGEECLYL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,472
Number of Sequences: 5004
Number of extensions: 56445
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)