Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31003.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 95 4e-20
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 48 6e-06
09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727... 29 2.1
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 29 3.7
11_01_0433 - 3323372-3324616,3324708-3324905 28 4.9
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 6.5
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 6.5
11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809 27 8.6
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 95.1 bits (226), Expect = 4e-20
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Frame = +1
Query: 4 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 180
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 181 LNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGG 360
+ Y ++Y + +VN E IVGW++ L S H+T+DT G
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRG 137
Query: 361 RMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTV 501
++AY+ L + + F + + L E VG + + T+
Sbjct: 138 DASIKAYISSNLSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKSTI 184
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 174
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 175 AELNYAMDVYELNRRVNS 228
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 252
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115
>09_02_0325 +
7276650-7276770,7276979-7277055,7277146-7277188,
7277276-7277333,7277922-7277991,7278202-7278670,
7278895-7278959
Length = 300
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 593 CSAGTPASSPRHHXRQVRARGHAARPATSPDTVFWHTCRPTISGS 459
C G+P +SP+H R RG+ A + D H+ + SGS
Sbjct: 226 CQPGSPTASPKHERAAKRQRGNGAE-FSETDFALPHSIFESSSGS 269
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 565 RDITCARSEPAATPLDPRPHQTQSSGT 485
+DIT A P TP PRP T S+ T
Sbjct: 277 KDITVAPPPPTPTPTPPRPQGTASNTT 303
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 222 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 127
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 98 ARATKEWWK*PTASACHTKN-MPIKSK 175
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809
Length = 191
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +3
Query: 318 EPXPCYSGHFAGWRSNGFTCICLCTIGSAKWKARLHVHSCRC 443
+P CY GH G GF + S+ W + H RC
Sbjct: 120 QPARCYGGHSTGSNGEGFGGHPATSPPSSSWVSLPREHRDRC 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,853
Number of Sequences: 37544
Number of extensions: 406964
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -