Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV31003.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U94855-1|AAD03467.1| 357|Homo sapiens translation initiation fa... 156 5e-38
CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein. 156 5e-38
BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation ... 156 5e-38
BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation ... 156 5e-38
AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens ... 156 5e-38
AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein. 131 2e-30
D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 / ... 60 6e-09
BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome, ma... 60 6e-09
BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein. 60 6e-09
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 50 8e-06
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 48 3e-05
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 48 3e-05
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 48 3e-05
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 48 3e-05
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 48 3e-05
AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation ... 48 3e-05
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 42 0.002
U70735-1|AAD03469.1| 297|Homo sapiens 34 kDa Mov34 homolog prot... 39 0.015
BC002520-1|AAH02520.2| 327|Homo sapiens COP9 constitutive photo... 39 0.015
BC041372-1|AAH41372.2| 296|Homo sapiens LOC283514 protein protein. 31 2.3
>U94855-1|AAD03467.1| 357|Homo sapiens translation initiation
factor 3 47 kDa subunit protein.
Length = 357
Score = 156 bits (379), Expect = 5e-38
Identities = 75/164 (45%), Positives = 105/164 (64%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 187 YAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGGRM 366
+A ++YEL+++V+ +E I+GW+A +L A + H+T+DTSL GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 367 GLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 498
++AYV +GVP G MFTP+ V Y+ E +G+ + KT
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKT 255
>CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein.
Length = 357
Score = 156 bits (379), Expect = 5e-38
Identities = 75/164 (45%), Positives = 105/164 (64%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 187 YAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGGRM 366
+A ++YEL+++V+ +E I+GW+A +L A + H+T+DTSL GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 367 GLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 498
++AYV +GVP G MFTP+ V Y+ E +G+ + KT
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKT 255
>BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 156 bits (379), Expect = 5e-38
Identities = 75/164 (45%), Positives = 105/164 (64%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 187 YAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGGRM 366
+A ++YEL+++V+ +E I+GW+A +L A + H+T+DTSL GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 367 GLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 498
++AYV +GVP G MFTP+ V Y+ E +G+ + KT
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKT 255
>BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 156 bits (379), Expect = 5e-38
Identities = 75/164 (45%), Positives = 105/164 (64%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 92 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 151
Query: 187 YAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGGRM 366
+A ++YEL+++V+ +E I+GW+A +L A + H+T+DTSL GRM
Sbjct: 152 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 211
Query: 367 GLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 498
++AYV +GVP G MFTP+ V Y+ E +G+ + KT
Sbjct: 212 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKT 255
>AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
Length = 350
Score = 156 bits (379), Expect = 5e-38
Identities = 75/164 (45%), Positives = 105/164 (64%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++HPV+L IVD+YERRN + RVIGTLLGT DK VEVTNCF VPH E D+V ++
Sbjct: 85 VRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDME 144
Query: 187 YAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGGRM 366
+A ++YEL+++V+ +E I+GW+A +L A + H+T+DTSL GRM
Sbjct: 145 FAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRM 204
Query: 367 GLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 498
++AYV +GVP G MFTP+ V Y+ E +G+ + KT
Sbjct: 205 SIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKT 248
>AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein.
Length = 348
Score = 131 bits (317), Expect = 2e-30
Identities = 68/164 (41%), Positives = 103/164 (62%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++HPV+L VD+YERRN + RVIGTLLGT +K VEVTNCF V + E +D+V ++
Sbjct: 82 VRLHPVLLASTVDSYERRNKGAARVIGTLLGTVNKHSVEVTNCFSVSYNE-SDEVVVDME 140
Query: 187 YAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSLAGGRM 366
+A ++YEL+++V+ +E I+GW+A +L A + H+T+DTSL G M
Sbjct: 141 FAKNMYELHKKVSPNELILGWYAAGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGHM 200
Query: 367 GLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKT 498
++AYV +GVP G+ +FTP+ V Y+ E + + + KT
Sbjct: 201 SIKAYVSTLMGVP-GRTVGVFTPLTVKYAYYDTECIRVDLIMKT 243
>D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 /
Mov34 protein protein.
Length = 324
Score = 60.1 bits (139), Expect = 6e-09
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE--HADQV- 171
V VHP+VL +VD + R + + RV+G LLG+ K V++V+N F VP E D V
Sbjct: 9 VVVHPLVLLSVVDHFNRIVKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 172 EAELNYAMDVYELNRRVNSSESIVGWW 252
+ +Y ++Y + ++VN+ E IVGW+
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWY 95
>BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
protein.
Length = 324
Score = 60.1 bits (139), Expect = 6e-09
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE--HADQV- 171
V VHP+VL +VD + R + + RV+G LLG+ K V++V+N F VP E D V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 172 EAELNYAMDVYELNRRVNSSESIVGWW 252
+ +Y ++Y + ++VN+ E IVGW+
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWY 95
>BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein.
Length = 326
Score = 60.1 bits (139), Expect = 6e-09
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE--HADQV- 171
V VHP+VL +VD + R + + RV+G LLG+ K V++V+N F VP E D V
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 172 EAELNYAMDVYELNRRVNSSESIVGWW 252
+ +Y ++Y + ++VN+ E IVGW+
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGWY 95
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 49.6 bits (113), Expect = 8e-06
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG K +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVKDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 48.0 bits (109), Expect = 3e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 48.0 bits (109), Expect = 3e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 48.0 bits (109), Expect = 3e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 48.0 bits (109), Expect = 3e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 48.0 bits (109), Expect = 3e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 48.0 bits (109), Expect = 3e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+ +I+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 98
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 99 YQMEMMRSLRHVNIDHLHVGWY 120
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 41.9 bits (94), Expect = 0.002
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +1
Query: 7 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELN 186
V++ +V+F+ Y+ + V G LLG + +E+TNCF P D E+
Sbjct: 39 VQIDGLVVFK---HYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDEVQ 95
Query: 187 YAMDVYELNRRVNSSESIVGWW 252
Y M++ R VN VGW+
Sbjct: 96 YQMEMMRSLRHVNIDHLHVGWY 117
>U70735-1|AAD03469.1| 297|Homo sapiens 34 kDa Mov34 homolog
protein.
Length = 297
Score = 38.7 bits (86), Expect = 0.015
Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 4/173 (2%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHR---VIGTLLGTSDKGVVEVTNCFCVPHKEHADQV 171
+SV +HP+V+ I D + R + R VIG L+G + +EV N F + +++
Sbjct: 9 VSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI 68
Query: 172 EAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSL 351
+ Y E ++V +GW+ + + + S + L+
Sbjct: 69 IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMT 128
Query: 352 AGGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGL-QVCQKTVSG 507
+ + + V + + NG+ +F + TL E E +G+ V + T +G
Sbjct: 129 KHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATG 180
>BC002520-1|AAH02520.2| 327|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 6 (Arabidopsis)
protein.
Length = 327
Score = 38.7 bits (86), Expect = 0.015
Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 4/173 (2%)
Frame = +1
Query: 1 ISVKVHPVVLFQIVDAYERRNADSHR---VIGTLLGTSDKGVVEVTNCFCVPHKEHADQV 171
+SV +HP+V+ I D + R + R VIG L+G + +EV N F + +++
Sbjct: 39 VSVALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI 98
Query: 172 EAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTSIIPVNAVSLXHVTLDTSL 351
+ Y E ++V +GW+ + + + S + L+
Sbjct: 99 IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMT 158
Query: 352 AGGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGL-QVCQKTVSG 507
+ + + V + + NG+ +F + TL E E +G+ V + T +G
Sbjct: 159 KHTDLPVSVFESV-IDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATG 210
>BC041372-1|AAH41372.2| 296|Homo sapiens LOC283514 protein protein.
Length = 296
Score = 31.5 bits (68), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 273 NHSSVIHEYYSRECREPXPCYSGHFAGWRSNGFT-CICLCTIGSAKWKARLHV 428
+H H ++ R P + AG +N T C+C+C + S +W+ RL V
Sbjct: 98 HHCHHRHHHHLRHHAHPHHLHHQE-AGLHANPVTPCLCMCPLFSCQWEGRLEV 149
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,709,228
Number of Sequences: 237096
Number of extensions: 2215457
Number of successful extensions: 10652
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10631
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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