Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31003.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    82   3e-16
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    51   7e-07
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    27   7.7  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        27   7.7  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    27   7.7  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    27   7.7  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    27   7.7  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    27   7.7  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
 Frame = +1

Query: 1   ISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHA 162
           ++V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P  E  
Sbjct: 5   LTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESN 64

Query: 163 DQVEAELNYAMDVYELNRRVNSSESIVGWWALAMK*PTTPLLYTS-----IIPVNA---- 315
           D +E +  +   +    ++ + +E  VGW+       ++ L+Y       I   +A    
Sbjct: 65  DDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRES 124

Query: 316 VSLXHVTLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPEIVGL 480
             +  +T+DT+ +G    RM +RAY+    G+P   G    +F P+ V L  +  E+V +
Sbjct: 125 PPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAM 184

Query: 481 QVCQKTV 501
           Q+ +K +
Sbjct: 185 QLIEKAL 191


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 177
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 178 ---ELNYAMDVYELNRRVNSSESIVGWW 252
              +++Y   +Y +  +V + E IVGW+
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWY 128


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 131 TASACHTKNMPIKSKRNLITRWMFTS 208
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical
           protein C15H11.5 protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 283 LLYTSIIP-VNAVSLXHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTPVDVTLTCY 459
           LL++ ++P ++ V+  H+  D  +   R     Y  V +  P  KQ  +F P  +    +
Sbjct: 166 LLHSFLVPQIDRVNSSHIQYDKEMKYQRQIFEDYPFVKIFYPTKKQSVLFPPPPLPNILF 225

Query: 460 EP 465
           EP
Sbjct: 226 EP 227


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 118 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 17
           PLL  SCP+ C+ LC        + P F+ K  D
Sbjct: 44  PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 7   VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCF 138
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSF 61


>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 172 RLDRHVLCVARRSSWLLPPLLCRSCP 95
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
 Frame = +1

Query: 280 PLLYTSIIPVNAVSLXHVTLDTSLAGGRMGLRAYVCVPL--------GVPNGKQGCMFTP 435
           PLL  +I+PV+ + L  V  +      ++ L +   V L        G  N       T 
Sbjct: 595 PLLL-AIVPVSQILLLLVIYNMGKLFSKLNLGSVEFVTLCMSSFFYTGNSNSLSTLSLTS 653

Query: 436 VDVTLTCYEPEIVGLQVCQKTVSGEV 513
             V L+ Y+P +VGLQ+   T SG +
Sbjct: 654 AYVGLSSYQPILVGLQLMLYTFSGPI 679


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 95  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 95  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 172 RLDRHVLCVARRSSWLLPPLLCRSCP 95
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 95  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 95  WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 247
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 381  CLCTIGSAKWKARLHVHSCRCHSH 452
            C CT    +W   +H   CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 26  FYFKLWTHTNVEMQILTELSAPYWARA 106
           FY  +W+ T V  + LT     YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,857,237
Number of Sequences: 27780
Number of extensions: 338467
Number of successful extensions: 842
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)