Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31003.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.56 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   0.98 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.9  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 369 FTCICLCTIGSAKWKARLHVHSCRCHSHM 455
           + CI    +GSA+  ARL+V+      HM
Sbjct: 469 YKCIAASKVGSAEHSARLNVYGLPFIRHM 497


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 377 ARKPIRPPASEVSRVTWXRLTAFTGIILVYNRG 279
           +R P+RPP   +S     R   +T + LV  +G
Sbjct: 121 SRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQG 153


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 390 TIGSAKWKARLHVHSCRCH 446
           ++G+ K   R H   C+CH
Sbjct: 28  SLGALKMHIRTHTLPCKCH 46


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 142 RRSSWLLPPLLCRSCPIRCR 83
           RRS  + PP    +CP+ C+
Sbjct: 333 RRSEPVEPPRRKNNCPLHCK 352


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 15/81 (18%), Positives = 31/81 (38%)
 Frame = +1

Query: 10  KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 189
           +++P   F      E +N    R    + G ++     V   +   +    +  E +L+Y
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPEYKLDY 223

Query: 190 AMDVYELNRRVNSSESIVGWW 252
            M+  ELN        ++ +W
Sbjct: 224 FMEDVELNAYYYYMREMLPYW 244


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 184 NYAMDVYELNRRVNSSE 234
           NY  DVY+ N  V+S E
Sbjct: 7   NYYGDVYQWNHTVSSGE 23


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 15/81 (18%), Positives = 31/81 (38%)
 Frame = +1

Query: 10  KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 189
           +++P   F      E +N    R    + G ++     V   +   +    +  E +L+Y
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYNDPEYKLDY 223

Query: 190 AMDVYELNRRVNSSESIVGWW 252
            M+  ELN        ++ +W
Sbjct: 224 FMEDVELNAYYYYMREMLPYW 244


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 366 GFTCICLCTIGSAKWKARLHVHSCRC 443
           GF C+C+  +   + K RLH     C
Sbjct: 9   GF-CVCVGALTIEELKTRLHTEQSVC 33


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 149
           C     C I    R R   CR+ +       R  +  ERQR+   +Q  + +T
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
 Frame = +3

Query: 6   CEGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 149
           C     C I    R R   CR+ +       R  +  ERQR+   +Q  + +T
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 32  ILTTNAWLKLEWV 44


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 32  ILTTNAWLKLEWV 44


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 32  ILTTNAWLKLEWV 44


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 32  ILTTNAWLKLEWV 44


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 32  ILTTNAWLKLEWV 44


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 32  ILTTNAWLKLEWV 44


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 100 ILTTNAWLKLEWV 112


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 332 LLWTLRWLEVEWV 370
           +L T  WL++EWV
Sbjct: 100 ILTTNAWLKLEWV 112


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 332 LLWTLRWLEVEWVYVHM 382
           LL T  WL++EW  V+M
Sbjct: 69  LLITNLWLKLEWNDVNM 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,537
Number of Sequences: 438
Number of extensions: 4227
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)