Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31002.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904...    31   0.70 
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    30   1.2  
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    30   1.6  
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595     29   2.8  
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818           29   2.8  
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286...    29   3.7  
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795...    28   6.5  

>06_01_1202 +
           10389090-10389140,10389218-10389853,10390355-10390439,
           10390536-10390654,10391251-10391318,10391401-10391710
          Length = 422

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRT 371
           G+G  K+D++  K+ K K +P P    T P  K  +   N   QD    RT
Sbjct: 355 GKGKGKKDEKEDKDKKIKRKPSPTVQATTPPAK--RRKNNEVPQDSPAMRT 403


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +3

Query: 231 QKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRTTE 377
           + E++ S  E++GK + K  +G+       + + +N+K+++    +TTE
Sbjct: 51  ESEEEESEDESEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTE 99


>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 111 QEDHNGEFLRCGSSEQIRSFLGR*DRSS*CVKSA--RAGEGAQKEDQRSRKENKGKPEPK 284
           Q+   G FL  G  E+ RS      +    + SA  R GE A+ +D+ +R   +GK    
Sbjct: 20  QKAEKGNFLEVGEEERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREGKVSVT 79

Query: 285 PAKGVTVPT 311
              G T PT
Sbjct: 80  SNPGET-PT 87


>11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595
          Length = 216

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186


>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
          Length = 216

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 219 GEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQ 335
           G+G  K+D++  K+ K K +P P    T P  K  K  +
Sbjct: 148 GKGKGKKDEKEDKDKKIKRKPSPIVQATTPPAKRRKNNE 186


>01_06_1250 +
           35726115-35726255,35727435-35727479,35728570-35728692,
           35728804-35728911,35729247-35729360,35729440-35729613,
           35729881-35729976,35730165-35730272,35730389-35730496,
           35730595-35730743,35731255-35731408,35732487-35732647,
           35733739-35733945,35733968-35734025,35734058-35734222,
           35734305-35734388,35735670-35735863,35735952-35736011,
           35736203-35736407
          Length = 817

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F+N    G+GY F    F
Sbjct: 779 SAFLHALRLHWVEFMNKFYHGDGYKFRPFSF 809


>03_02_0381 +
           7951360-7951509,7952125-7952169,7952625-7952744,
           7952823-7952930,7953256-7953363,7953635-7953808,
           7954054-7954191,7954643-7954750,7954866-7954973,
           7955086-7955234,7955816-7955969,7956143-7956303,
           7956391-7956597,7956703-7956886,7956974-7957057,
           7957146-7957345,7957476-7957535,7957631-7957835
          Length = 820

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F N    G+GY F+   F
Sbjct: 782 SAFLHALRLHWVEFQNKFYEGDGYKFAPFSF 812


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,027
Number of Sequences: 37544
Number of extensions: 228833
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)