Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31002.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   5.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   5.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   5.8  
Z11115-9|CAD30453.1|  889|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z11115-8|CAD30452.1|  888|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z11115-7|CAD30451.1|  899|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z11115-6|CAD30450.1|  894|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z11115-5|CAA77453.2|  883|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z11115-4|CAA77448.2|  905|Caenorhabditis elegans Hypothetical pr...    27   7.7  
CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF320904-1|AAG41437.1|  889|Caenorhabditis elegans UNC-32F vacuo...    27   7.7  
AF320903-1|AAG41436.1|  888|Caenorhabditis elegans UNC-32E vacuo...    27   7.7  
AF320902-1|AAG41435.1|  899|Caenorhabditis elegans UNC-32D vacuo...    27   7.7  
AF320901-1|AAG41434.1|  894|Caenorhabditis elegans UNC-32C vacuo...    27   7.7  
AF320900-1|AAG41433.1|  883|Caenorhabditis elegans UNC-32B neuro...    27   7.7  
AF320899-1|AAG41432.1|  905|Caenorhabditis elegans UNC-32A vacuo...    27   7.7  

>Z70684-8|CAA94603.2|  360|Caenorhabditis elegans Hypothetical
           protein F28D1.8 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRK 317
           K + AG+G  K+  +  KE KG  + +  K  + PT+K
Sbjct: 321 KKSGAGKGKGKKKSKVSKEKKGGKKVQKKKPASKPTKK 358


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRTTE 377
            ++KE +GKPE K  K  T      I ET    ++D  + + +E
Sbjct: 9171 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9213


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRTTE 377
            ++KE +GKPE K  K  T      I ET    ++D  + + +E
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 249  SRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRTTE 377
            ++KE +GKPE K  K  T      I ET    ++D  + + +E
Sbjct: 9191 TKKEIQGKPEKKIMKKKTEKADSSISETSETLTKDLTQTKQSE 9233


>Z11115-9|CAD30453.1|  889|Caenorhabditis elegans Hypothetical
           protein ZK637.8f protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 845 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 875


>Z11115-8|CAD30452.1|  888|Caenorhabditis elegans Hypothetical
           protein ZK637.8e protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 844 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 874


>Z11115-7|CAD30451.1|  899|Caenorhabditis elegans Hypothetical
           protein ZK637.8d protein.
          Length = 899

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 855 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 885


>Z11115-6|CAD30450.1|  894|Caenorhabditis elegans Hypothetical
           protein ZK637.8c protein.
          Length = 894

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 850 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 880


>Z11115-5|CAA77453.2|  883|Caenorhabditis elegans Hypothetical
           protein ZK637.8b protein.
          Length = 883

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 839 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 869


>Z11115-4|CAA77448.2|  905|Caenorhabditis elegans Hypothetical
           protein ZK637.8a protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 861 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 891


>CU457741-8|CAM36349.1|  544|Caenorhabditis elegans Hypothetical
           protein C42C1.8 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 240 DQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRTTE 377
           +++++  NK KP+PK  K     ++KG K     + +D  K   T+
Sbjct: 9   ERKNQNPNKSKPDPKEKKS----SKKGKKSKNTEEQEDKTKTEETQ 50


>AF320904-1|AAG41437.1|  889|Caenorhabditis elegans UNC-32F vacuolar
           proton pump 101kDa subunit variant protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 845 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 875


>AF320903-1|AAG41436.1|  888|Caenorhabditis elegans UNC-32E vacuolar
           proton pump 101kDa subunit variant protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 844 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 874


>AF320902-1|AAG41435.1|  899|Caenorhabditis elegans UNC-32D vacuolar
           proton pump 103kDa subunit variant protein.
          Length = 899

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 855 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 885


>AF320901-1|AAG41434.1|  894|Caenorhabditis elegans UNC-32C vacuolar
           proton pump 102kDa subunit variant protein.
          Length = 894

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 850 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 880


>AF320900-1|AAG41433.1|  883|Caenorhabditis elegans UNC-32B neuronal
           vacuolar protonpump 100 kDa subunit variant protein.
          Length = 883

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 839 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 869


>AF320899-1|AAG41432.1|  905|Caenorhabditis elegans UNC-32A vacuolar
           proton pump 103kDa subunit variant protein.
          Length = 905

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F +   GG GY F+   F
Sbjct: 861 SAFLHALRLHWVEFQSKFYGGLGYEFAPFSF 891


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,757,845
Number of Sequences: 27780
Number of extensions: 179080
Number of successful extensions: 589
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)