Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31002.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    28   5.4  
At5g54020.1 68418.m06719 expressed protein                             27   7.2  
At3g49480.1 68416.m05408 hypothetical protein several hypothetic...    27   7.2  
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof...    27   7.2  
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila...    27   9.5  
At3g10680.1 68416.m01284 heat shock protein-related contains wea...    27   9.5  
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila...    27   9.5  

>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 240 DQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQKWRTTE 377
           D++ + ++KG       +    P  +G  E ++ +S++  KWR T+
Sbjct: 726 DKKEQSQDKGVEAETKEEEKQYPNSEGESEGEDSESEEEPKWRETD 771


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 41  DKMSPY*CAESNPITSKYCVIKSSR 115
           D  +PY C E N +  KYC+ K  R
Sbjct: 154 DDRNPYVCLECNLMVHKYCIEKLPR 178


>At3g49480.1 68416.m05408 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 309

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 332 SKCEVSRHXKVENNRRVRDLHARSIVMLSVRLRVVVKIG 448
           S C V +H KV  NRRV D      V +   LR+  K G
Sbjct: 54  SSCPVLKHLKVTRNRRVEDNVRTFRVEVPSLLRLDYKAG 92


>At1g32660.1 68414.m04028 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 446

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 KEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNVKSQDXQK 362
           +ED+     +K  P P   K  TVPT+  +K++   K ++ +K
Sbjct: 8   QEDRSCSSASKLDPIPLDLKMATVPTKSHMKKSHQNKLEEDEK 50


>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 821

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F N    G+GY F+   F
Sbjct: 783 SAFLHALRLHWVEFQNKFYEGDGYKFAPFTF 813


>At3g10680.1 68416.m01284 heat shock protein-related contains weak
           similarity to Pfam profile PF00011: Hsp20/alpha
           crystallin family
          Length = 490

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 KSARAGEGAQKEDQRSRKENKGKPEPKPAKGVTVPTRKGIKETQNV 341
           K  +A +  +K  QRS +E  G P P    G T+  +K ++E + V
Sbjct: 116 KQEKAVQDQEKIGQRSNQEKSGGPGP---NGSTLGRKKALEEEKQV 158


>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 817

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 368 SPLLXVLRLHILSFLNALPGGNGYAFSGLGF 276
           S  L  LRLH + F+     G+GY F    F
Sbjct: 784 SAFLHALRLHWVEFMGKFFNGDGYKFKPFSF 814


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,242,750
Number of Sequences: 28952
Number of extensions: 170876
Number of successful extensions: 458
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)