Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV31001.Seq
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           36   0.017
SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)               27   7.7  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = -2

Query: 383 SKLVGLRAATTSMMVSRNL-------AAAQKATDPIQQLFLDKIREYKQKARVAK 240
           S+L     +T S+++ RN+       A   K  DPIQ+LF++K+  YKQK++  K
Sbjct: 81  SRLAVASPSTCSIVLRRNIGTTYAAMAKMDKNADPIQRLFVEKLEAYKQKSKGGK 135


>SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)
          Length = 821

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 277 KSGNTNRRRGWQSPRCQPCCRE 212
           K+G + R   W  P  Q CCR+
Sbjct: 786 KAGRSQRENDWDCPGEQKCCRD 807


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,946
Number of Sequences: 59808
Number of extensions: 286886
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)