Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30998.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.28 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +1

Query: 376 TTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIP 552
           T+P   S +    P   TTS N S   S T+ + +  ++G  N  + +       ++ P
Sbjct: 144 TSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYP 202


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 488 DPGRPTVKRPRVSS 529
           DPGR +   PR+SS
Sbjct: 61  DPGRKSPSSPRISS 74


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 408 NVPKSNNYVNEQIRGYI-RNSHE 473
           N+ KSN   NEQ+R Y+ +N  E
Sbjct: 319 NLEKSNLNHNEQLRKYLCKNEDE 341


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 408 NVPKSNNYVNEQIRGYI-RNSHE 473
           N+ KSN   NEQ+R Y+ +N  E
Sbjct: 211 NLEKSNLNHNEQLRKYLCKNEDE 233


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 252 FKCAVCGTKLTLK 290
           FKC +CG   T K
Sbjct: 163 FKCKICGRAFTTK 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,637
Number of Sequences: 336
Number of extensions: 3293
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)