Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30998.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.17
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.68
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 27 1.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.1
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.7
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 3.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.17
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +1
Query: 343 ATYQRSVRATW--TTP-QWASEALSTCPKAIT-TSTNRSEDTSGTAMSQNCLRSGATNGE 510
+T S + +W TTP S + T +I TSTNR+ T ++ S + S
Sbjct: 609 STSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSS 668
Query: 511 ASTRLQQGSYRVIPLTTSTGDSTPAPST 594
S + S+ T+S+ STP P+T
Sbjct: 669 TSFASESSSFYSNVTTSSSTVSTPPPTT 696
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.68
Identities = 23/100 (23%), Positives = 47/100 (47%)
Frame = +1
Query: 295 ITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMS 474
IT+TS K ++++T +++ +S LST PK ++S+ SE S +
Sbjct: 921 ITVTSSTLKPSLTSSVST-----ASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTN 975
Query: 475 QNCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTPAPST 594
++ ++ ++T S IP +T + ++ + ST
Sbjct: 976 SLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESAST 1015
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.2
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = +1
Query: 292 PITITSIGRKTKKYTALATYQRSVRATWTTPQWASEAL-STCPKAITTSTNRSED-TSGT 465
PIT +S+ + T+ S +TP +S L S+ P +T N S TS T
Sbjct: 851 PITSSSVLNSSTPITS------STALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSST 904
Query: 466 AMSQNCLRSGATNGEASTRLQQGSY--RVIPLTTSTGDSTPAPST 594
++ + + +T ST + S P+T+STG +T P T
Sbjct: 905 VVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPIT 949
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNV 413
F C +CG + + ++H+TE + +Y I P L N I AL +
Sbjct: 397 FPCEICGNYVYMGRKAFDKHFTEQRHIY-GLKCLGISPSPLFNQITSIDEALQL 449
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 923 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVG 982
Query: 424 ITTS-TNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTG 570
TT+ T+GT + S T S + + P+ T+ G
Sbjct: 983 FTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAG 1032
Score = 26.6 bits (56), Expect = 2.7
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 815 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTETVTSGSVG 874
Query: 424 ITTS-TNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGD---STPAPS 591
TT+ T+GT + S T S + + P+ T+ G P PS
Sbjct: 875 FTTTIATPIGSTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPS 934
Score = 26.6 bits (56), Expect = 2.7
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 887 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 946
Query: 424 ITTS-TNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGD---STPAPS 591
TT+ T+GT + S T S + + P+ T+ G P PS
Sbjct: 947 FTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPS 1006
Score = 26.2 bits (55), Expect = 3.6
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T SIG T T + + +V TP W +E +++
Sbjct: 707 AGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVLVDVPTPSWVTETVTSGSVG 766
Query: 424 ITTS-TNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGD---STPAPS 591
TT+ T+GT + S T S + + P+ T+ G P PS
Sbjct: 767 FTTTIATPIGSTAGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPS 826
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 295 ITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTS-TNRSEDTSGTAM 471
+T S+G T T + T +V TP W +E +++ TT+ T+GT +
Sbjct: 688 VTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSIGFTTTIATPIGSTAGTVL 747
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 779 AGTVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTETVTSGSVG 838
Query: 424 ITTS 435
TT+
Sbjct: 839 FTTT 842
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 176 KQVLS*KFGRYILLTICVHVIITNYT*FTLMLITFGFLHLTLLRCYRGSPVVC 18
K+V S GR I++ + + I+ T TL L FG L L+ ++ V C
Sbjct: 72 KEVRSNVSGREIIIKMIITFILVQTTLITLDLYVFGATGLGLILSWKLFEVAC 124
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 SGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKA 423
+G + V P+ +T S+G T T + T +V TP W +E +++
Sbjct: 714 AGTVVVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTETVTSGSVG 773
Query: 424 ITTS-TNRSEDTSGTAM 471
TT+ T+GT +
Sbjct: 774 FTTTIATPVGTTAGTVL 790
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +1
Query: 364 RATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYR 543
R T T + T P+ T+ ++ TS + ++N + +NG + S+R
Sbjct: 148 RTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNS--TRNGTSAATSNGTGTGAGTGASHR 205
Query: 544 VIPLTTSTGDSTPAPS 591
P+T ++T A S
Sbjct: 206 SSPVTNRQTNNTSALS 221
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 291 TYYNNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNYVNEQIRGYIRN 464
TYYN+ H+ +Y + + + P L N ++ +AL +N ++ RN
Sbjct: 453 TYYNDHHFHWGYHIYACAVIGLLDPSWLVNDNIRYVNALLRDSANPSESDTYFAMFRN 510
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.8
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTS---GTA 468
T S T +A +T SV +T T +S LS+ TS + + TS TA
Sbjct: 423 TPLSSANSTTATSASSTPLSSVNSTTATSA-SSTPLSSVNSTTATSASSTPLTSVNSTTA 481
Query: 469 MSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTPAPS 591
S + + N ++T TTST S+ APS
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS 522
Score = 25.4 bits (53), Expect = 6.3
Identities = 25/98 (25%), Positives = 39/98 (39%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQ 477
T T+ T + + + +T +TP +S +T A +T T+ T+ S
Sbjct: 314 TTTTSASSTPLSSVSSANSTTATSTSSTPL-SSVNSTTATSASSTPLTSVNSTTATSASS 372
Query: 478 NCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTPAPS 591
L S N ++T TTST S+ APS
Sbjct: 373 TPLTS--VNSTSATSASSTPLTSANSTTSTSVSSTAPS 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,844
Number of Sequences: 5004
Number of extensions: 54185
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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