Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30998.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396 33 0.23
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 33 0.23
03_05_0851 + 28225608-28226570 30 1.2
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 29 2.8
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 28 4.9
04_01_0288 + 3824337-3826385 28 4.9
10_08_0142 - 15169825-15170538 28 6.5
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 27 8.6
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 27 8.6
>10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396
Length = 217
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 372 LDNSSVGIRSALNVPKSNNYVNEQIRGYIRNSHEPELSPIRGD 500
LD+ V ++S L V + V +RG+ R HE LSP+RG+
Sbjct: 140 LDSGGVELQSTLGVNVGEDLV--LVRGWPRRCHELRLSPVRGE 180
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 390 GIRSALNVPKSNNYVNEQIRGYIRNSHEPELSPIRGDQR*SVHASPARELSRDTPDYQYG 569
G +S KSNN N++I+ + EPE + +R +R H +RD P Q
Sbjct: 150 GTKSTTGPQKSNNLQNKKIKSR-EDGREPEAAELRRGERRRDHEVVFAAAARDPPTLQRP 208
Query: 570 RFD 578
FD
Sbjct: 209 DFD 211
>03_05_0851 + 28225608-28226570
Length = 320
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 385 QWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGS 537
+W + A + +A T + ED S T+ S N S +TN ST L+ GS
Sbjct: 203 RWVTLASAISVEAATAAAAAGEDKSPTSPSNNLNHSSSTN-LVSTELEDGS 252
>07_03_1760 - 29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 397 EALSTCPKAITTSTNRS--EDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTST 567
E +CPK ++T+TN E + + + N +R A + S +QQ S+ +P S+
Sbjct: 886 ENAGSCPKRLSTNTNMGGPETCTPSIVPNNRVRKAAAKRKVSA-VQQNSFGDVPCKNSS 943
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 533 PCWRRVDASPLVAPDRRQFWLMAVPDVSS 447
P W+ + L+A D FWL PD SS
Sbjct: 199 PIWQSMQEQELLADDVFSFWLNRDPDASS 227
>04_01_0288 + 3824337-3826385
Length = 682
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -2
Query: 597 LCGGRWRRISRTGSQGYHAIAPLLETRGRFTVGRPGSETVLAHGC 463
LC GRW R+ T AI + R GR G +L H C
Sbjct: 350 LCSGRWHRLRYTVLSFRRAIKIVFSRNSRRWSGRMGQYNML-HSC 393
>10_08_0142 - 15169825-15170538
Length = 237
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 231 HLLS*WMFKCAVCGT 275
HL++ W+F CAVC T
Sbjct: 5 HLVAAWLFPCAVCAT 19
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 409 TCPKAITTSTNRSEDTSGTAMSQNCLRSGATNGEASTRLQQGSYRVIPLTTSTGDSTPAP 588
T P+A + ++ Q+ +R+ + EA + + IP+ TS D +P+P
Sbjct: 732 TTPQAPAPAKRKNTKKRKVRSLQSLMRNAPVHPEAPSSDSEDCDDGIPMQTSDSDKSPSP 791
Query: 589 S 591
S
Sbjct: 792 S 792
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 122 EHKSLTKCTDRISTRAPALGAMKSCIKWTE 211
E T CT+R++ R PA+ ++ W +
Sbjct: 630 ESSRRTSCTERVALRCPAIDSVARSFSWED 659
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,182
Number of Sequences: 37544
Number of extensions: 361822
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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